Gene name: RPL38
Reference locus (S288C): YLR325C
Gene biotype: protein_coding
Description: Ribosomal 60S subunit protein L38; homologous to mammalian ribosomal protein L38, no bacterial homolog; Belongs to the eukaryotic ribosomal protein eL38 family
Top 10 interactors (score): RPL14A (0.999); RPL12B (0.999); RPL9A (0.999); RPS7A (0.999); RPS27B (0.999); RPS24A (0.999); RPS24B (0.999); RPL1B (0.999); RPL5 (0.999); RPL43B (0.999); RPL23B (0.999); RPS18B (0.999); RPL36A (0.999); RPS6B (0.999); RLP24 (0.999); RPS0B (0.999); RPL7B (0.999); RPL26B (0.999); RPS5 (0.999); RPL31B (0.999)
Homologues (species, bitscore): RPL38 (Homo sapiens, 63.2); Rpl38 (Mus musculus, 62.4); rpl38 (Danio rerio, 63.2); rpl38 (Xenopus tropicalis, 63.5); RpL38 (Drosophila melanogaster, 60.5); rpl-38 (Caenorhabditis elegans, 63.9); RPL38A (Arabidopsis thaliana, 57.0)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:729598-729834:- | gene-YLR325C_AKU4011 | rna-NM_001182214.1_AKU4011 | cds-NP_013429.1_AKU4011 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000170.1:2849-3085:+ | gene-YLR325C_BG1 | rna-NM_001182214.1_BG1 | cds-NP_013429.1_BG1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:765431-765667:- | gene-YLR325C_Bruggeman | rna-NM_001182214.1_Bruggeman | cds-NP_013429.1_Bruggeman | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:763585-763821:- | gene-YLR325C_CAT1 | rna-NM_001182214.1_CAT1 | cds-NP_013429.1_CAT1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:764514-764750:- | gene-YLR325C_CBS1585 | rna-NM_001182214.1_CBS1585 | cds-NP_013429.1_CBS1585 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:749114-749350:- | gene-YLR325C_CBS436 | rna-NM_001182214.1_CBS436 | cds-NP_013429.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:802469-802705:- | gene-YLR325C_CBS6412 | rna-NM_001182214.1_CBS6412 | cds-NP_013429.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:765186-765422:- | gene-YLR325C_CBS6413 | rna-NM_001182214.1_CBS6413 | cds-NP_013429.1_CBS6413 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:765757-765993:- | gene-YLR325C_CENPK1137D | rna-NM_001182214.1_CENPK1137D | cds-NP_013429.1_CENPK1137D | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:722881-723117:- | gene-YLR325C_EthanolRed | rna-NM_001182214.1_EthanolRed | cds-NP_013429.1_EthanolRed | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:752082-752318:- | gene-YLR325C_FaliES1 | rna-NM_001182214.1_FaliES1 | cds-NP_013429.1_FaliES1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000296.1:15541-15777:+ | gene-YLR325C_JAY291 | rna-NM_001182214.1_JAY291 | cds-NP_013429.1_JAY291 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:764658-764894:- | gene-YLR325C_MUCL30387 | rna-NM_001182214.1_MUCL30387 | cds-NP_013429.1_MUCL30387 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:770243-770479:- | gene-YLR325C_MUCL30388 | rna-NM_001182214.1_MUCL30388 | cds-NP_013429.1_MUCL30388 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:765755-765991:- | gene-YLR325C_MUCL39482 | rna-NM_001182214.1_MUCL39482 | cds-NP_013429.1_MUCL39482 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:760907-761143:- | gene-YLR325C_MUCL42920 | rna-NM_001182214.1_MUCL42920 | cds-NP_013429.1_MUCL42920 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:781117-781353:- | gene-YLR325C_NCIM3186 | rna-NM_001182214.1_NCIM3186 | cds-NP_013429.1_NCIM3186 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:775095-775331:- | gene-YLR325C_NCYC1407 | rna-NM_001182214.1_NCYC1407 | cds-NP_013429.1_NCYC1407 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:762877-763113:- | gene-YLR325C_PE2H3 | rna-NM_001182214.1_PE2H3 | cds-NP_013429.1_PE2H3 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:762621-762857:- | gene-YLR325C_PE2H4 | rna-NM_001182214.1_PE2H4 | cds-NP_013429.1_PE2H4 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:781143-781379:- | gene-YLR325C_S288C | rna-NM_001182214.1_S288C | cds-NP_013429.1_S288C | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000039.1:2930-3166:+ | gene-YLR325C_SA1 | rna-NM_001182214.1_SA1 | cds-NP_013429.1_SA1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:753974-754210:- | gene-YLR325C_ThermosaccDry | rna-NM_001182214.1_ThermosaccDry | cds-NP_013429.1_ThermosaccDry | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:766093-766329:- | gene-YLR325C_VR1 | rna-NM_001182214.1_VR1 | cds-NP_013429.1_VR1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000025.1:92388-92624:- | gene-YLR325C_ZTW1 | rna-NM_001182214.1_ZTW1 | cds-NP_013429.1_ZTW1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:740149-740385:- | gene-YLR325C_Sparadoxus | rna-NM_001182214.1_Sparadoxus | cds-NP_013429.1_Sparadoxus | 98.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |