Gene name: RPL37B
Reference locus (S288C): YDR500C
Gene biotype: protein_coding
Description: Ribosomal 60S subunit protein L37B; required for processing of 27SB pre-rRNA and formation of stable 66S assembly intermediates; protein abundance increases in response to DNA replication stress; homologous to mammalian ribosomal protein L37, no bacterial homolog; RPL37B has a paralog, RPL37A, that arose from the whole genome duplication
Top 10 interactors (score): RPL11B (0.999); RPS29B (0.999); RPL22A (0.999); RPL14B (0.999); RPL34A (0.999); RPL17B (0.999); RPL35B (0.999); RPL39 (0.999); RPL27A (0.999); RPL19B (0.999); RPL42A (0.999); RPL32 (0.999); RPS17A (0.999); RPL2A (0.999); RPS22A (0.999); RPL11A (0.999); RPS20 (0.999); RPS13 (0.999); RPS25B (0.999); RPL25 (0.999)
Homologues (species, bitscore): RPL37 (Homo sapiens, 113.2); Rpl37 (Mus musculus, 113.2); rpl37 (Danio rerio, 114.4); rpl37 (Xenopus tropicalis, 115.2); RpL37a (Drosophila melanogaster, 125.9); W01D2.1 (Caenorhabditis elegans, 114.4); AT3G16080 (Arabidopsis thaliana, 125.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:1390184-1390839:- | gene-YDR500C_AKU4011 | rna-NM_001180808.1_AKU4011 | cds-NP_010788.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000073.1:31743-32397:- | gene-YDR500C_BG1 | rna-NM_001180808.1_BG1 | cds-NP_010788.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:1421504-1422159:- | gene-YDR500C_Bruggeman | rna-NM_001180808.1_Bruggeman | cds-NP_010788.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:1398683-1399338:- | gene-YDR500C_CAT1 | rna-NM_001180808.1_CAT1 | cds-NP_010788.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:1384426-1385081:- | gene-YDR500C_CBS1585 | rna-NM_001180808.1_CBS1585 | cds-NP_010788.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:1403780-1404435:- | gene-YDR500C_CBS436 | rna-NM_001180808.1_CBS436 | cds-NP_010788.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:1380068-1380723:- | gene-YDR500C_CBS6412 | rna-NM_001180808.1_CBS6412 | cds-NP_010788.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:1403083-1403738:- | gene-YDR500C_CBS6413 | rna-NM_001180808.1_CBS6413 | cds-NP_010788.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:1448892-1449547:- | gene-YDR500C_CENPK1137D | rna-NM_001180808.1_CENPK1137D | cds-NP_010788.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:1393473-1394128:- | gene-YDR500C_EthanolRed | rna-NM_001180808.1_EthanolRed | cds-NP_010788.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:1397026-1397681:- | gene-YDR500C_FaliES1 | rna-NM_001180808.1_FaliES1 | cds-NP_010788.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000026.1:95277-95931:- | gene-YDR500C_JAY291 | rna-NM_001180808.1_JAY291 | cds-NP_010788.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:1404029-1404684:- | gene-YDR500C_MUCL30387 | rna-NM_001180808.1_MUCL30387 | cds-NP_010788.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:1386022-1386677:- | gene-YDR500C_MUCL30388 | rna-NM_001180808.1_MUCL30388 | cds-NP_010788.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:1375911-1376566:- | gene-YDR500C_MUCL39482 | rna-NM_001180808.1_MUCL39482 | cds-NP_010788.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:1318702-1319357:- | gene-YDR500C_MUCL42920 | rna-NM_001180808.1_MUCL42920 | cds-NP_010788.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:1450121-1450776:- | gene-YDR500C_NCIM3186 | rna-NM_001180808.1_NCIM3186 | cds-NP_010788.1_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:1389697-1390352:- | gene-YDR500C_NCYC1407 | rna-NM_001180808.1_NCYC1407 | cds-NP_010788.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:1400544-1401198:- | gene-YDR500C_PE2H3 | rna-NM_001180808.1_PE2H3 | cds-NP_010788.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:1406119-1406774:- | gene-YDR500C_PE2H4 | rna-NM_001180808.1_PE2H4 | cds-NP_010788.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:1450198-1450853:- | gene-YDR500C_S288C | rna-NM_001180808.1_S288C | cds-NP_010788.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000004.1:166280-166935:+ | gene-YDR500C_SA1 | rna-NM_001180808.1_SA1 | cds-NP_010788.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:1401248-1401903:- | gene-YDR500C_ThermosaccDry | rna-NM_001180808.1_ThermosaccDry | cds-NP_010788.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:1416989-1417644:- | gene-YDR500C_VR1 | rna-NM_001180808.1_VR1 | cds-NP_010788.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000008.1:443916-444571:- | gene-YDR500C_ZTW1 | rna-NM_001180808.1_ZTW1 | cds-NP_010788.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:1404063-1404732:- | gene-YDR500C_Sparadoxus | rna-NM_001180808.1_Sparadoxus | cds-NP_010788.1_Sparadoxus | 97.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |