Gene name: RPL36B
Reference locus (S288C): YPL249C-A
Gene biotype: protein_coding
Description: Ribosomal 60S subunit protein L36B; binds to 5.8 S rRNA; homologous to mammalian ribosomal protein L36, no bacterial homolog; RPL36B has a paralog, RPL36A, that arose from the whole genome duplication
Top 10 interactors (score): RPS15 (0.999); RPL35A (0.999); RPL40B (0.999); RPL9B (0.999); RPS3 (0.999); RPS2 (0.999); RPL20A (0.999); RPS19B (0.999); RPL8B (0.999); RPL31A (0.999); RPS16A (0.999); RPL28 (0.999); RPS9B (0.999); RPL26A (0.999); RPL12A (0.999); RPS14A (0.999); RPL6A (0.999); RPP1A (0.999); RPL6B (0.999); RPL1A (0.999)
Homologues (species, bitscore): RPL36 (Homo sapiens, 98.6); Rpl36 (Mus musculus, 98.6); rpl36 (Danio rerio, 94.7); rpl36 (Xenopus tropicalis, 97.1); RpL36 (Drosophila melanogaster, 80.5); rpl-36 (Caenorhabditis elegans, 95.5); AT2G37600 (Arabidopsis thaliana, 96.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:53441-53981:- | gene-YPL249C-A_AKU4011 | rna-NM_001184312.1_AKU4011 | cds-NP_015074.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000184.1:21148-21688:+ | gene-YPL249C-A_BG1 | rna-NM_001184312.1_BG1 | cds-NP_015074.1_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:77331-77871:- | gene-YPL249C-A_Bruggeman | rna-NM_001184312.1_Bruggeman | cds-NP_015074.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:75452-75992:- | gene-YPL249C-A_CAT1 | rna-NM_001184312.1_CAT1 | cds-NP_015074.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:57753-58293:- | gene-YPL249C-A_CBS1585 | rna-NM_001184312.1_CBS1585 | cds-NP_015074.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:72184-72724:- | gene-YPL249C-A_CBS436 | rna-NM_001184312.1_CBS436 | cds-NP_015074.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:62918-63458:- | gene-YPL249C-A_CBS6412 | rna-NM_001184312.1_CBS6412 | cds-NP_015074.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:53904-54444:- | gene-YPL249C-A_CBS6413 | rna-NM_001184312.1_CBS6413 | cds-NP_015074.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:75635-76175:- | gene-YPL249C-A_CENPK1137D | rna-NM_001184312.1_CENPK1137D | cds-NP_015074.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:52857-53397:- | gene-YPL249C-A_EthanolRed | rna-NM_001184312.1_EthanolRed | cds-NP_015074.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:59664-60204:- | gene-YPL249C-A_FaliES1 | rna-NM_001184312.1_FaliES1 | cds-NP_015074.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000264.1:20549-21089:+ | gene-YPL249C-A_JAY291 | rna-NM_001184312.1_JAY291 | cds-NP_015074.1_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:70496-71036:- | gene-YPL249C-A_MUCL30387 | rna-NM_001184312.1_MUCL30387 | cds-NP_015074.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:68938-69478:- | gene-YPL249C-A_MUCL30388 | rna-NM_001184312.1_MUCL30388 | cds-NP_015074.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:50883-51423:- | gene-YPL249C-A_MUCL39482 | rna-NM_001184312.1_MUCL39482 | cds-NP_015074.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:69767-70307:- | gene-YPL249C-A_MUCL42920 | rna-NM_001184312.1_MUCL42920 | cds-NP_015074.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:75682-76222:- | gene-YPL249C-A_NCIM3186 | rna-NM_001184312.1_NCIM3186 | cds-NP_015074.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:57331-57871:- | gene-YPL249C-A_NCYC1407 | rna-NM_001184312.1_NCYC1407 | cds-NP_015074.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:65068-65608:- | gene-YPL249C-A_PE2H3 | rna-NM_001184312.1_PE2H3 | cds-NP_015074.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:64711-65251:- | gene-YPL249C-A_PE2H4 | rna-NM_001184312.1_PE2H4 | cds-NP_015074.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:75699-76239:- | gene-YPL249C-A_S288C | rna-NM_001184312.1_S288C | cds-NP_015074.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000056.1:17586-18126:- | gene-YPL249C-A_SA1 | rna-NM_001184312.1_SA1 | cds-NP_015074.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:59665-60205:- | gene-YPL249C-A_ThermosaccDry | rna-NM_001184312.1_ThermosaccDry | cds-NP_015074.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:299538-300078:- | gene-YPL249C-A_VR1 | rna-NM_001184312.1_VR1 | cds-NP_015074.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:59210-59750:- | gene-YPL249C-A_ZTW1 | rna-NM_001184312.1_ZTW1 | cds-NP_015074.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:60719-61255:- | gene-YPL249C-A_Sparadoxus | rna-NM_001184312.1_Sparadoxus | cds-NP_015074.1_Sparadoxus | 99.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |