Gene name: RPL35B
Reference locus (S288C): YDL136W
Gene biotype: protein_coding
Description: Ribosomal 60S subunit protein L35B; homologous to mammalian ribosomal protein L35 and bacterial L29; RPL35B has a paralog, RPL35A, that arose from the whole genome duplication
Top 10 interactors (score): RPL33B (0.999); RPL13B (0.999); RPS8A (0.999); RPL12A (0.999); RPL37B (0.999); RPS16B (0.999); RPL9B (0.999); RPS18A (0.999); RPL6A (0.999); RPL13A (0.999); RPL27B (0.999); RPL1A (0.999); RPS14B (0.999); RPL15A (0.999); RPL16A (0.999); RPL8B (0.999); RPS3 (0.999); RPS2 (0.999); RPL20A (0.999); RPL40B (0.999)
Homologues (species, bitscore): RPL35 (Homo sapiens, 121.7); Rpl35 (Mus musculus, 122.1); rpl35 (Danio rerio, 117.5); rpl35 (Xenopus tropicalis, 116.3); RpL35 (Drosophila melanogaster, 103.6); rpl-35 (Caenorhabditis elegans, 84.3); AT3G55170 (Arabidopsis thaliana, 117.9)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:202055-202813:+ | gene-YDL136W_AKU4011 | rna-NM_001180251.2_AKU4011 | cds-NP_010090.1_AKU4011 | 84.7 | 92.8 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000102.1:346960-347728:- | gene-YDL136W_BG1 | rna-NM_001180251.2_BG1 | cds-NP_010090.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:219132-219482:+ | gene-YDL136W_Bruggeman | rna-NM_001180251.2_Bruggeman | cds-NP_010090.1_Bruggeman | 83.6 | 91.7 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:122506-123274:+ | gene-YDL136W_CAT1 | rna-NM_001180251.2_CAT1 | cds-NP_010090.1_CAT1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:200006-200751:+ | gene-YDL136W_CBS1585 | rna-NM_001180251.2_CBS1585 | cds-NP_010090.1_CBS1585 | 83.2 | 90.1 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:216976-217743:+ | gene-YDL136W_CBS436 | rna-NM_001180251.2_CBS436 | cds-NP_010090.1_CBS436 | 87.1 | 95.6 | Mismatch | 1 | 1 | 0 | False | False | False | True | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:199308-200077:+ | gene-YDL136W_CBS6412 | rna-NM_001180251.2_CBS6412 | cds-NP_010090.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:218480-219238:+ | gene-YDL136W_CBS6413 | rna-NM_001180251.2_CBS6413 | cds-NP_010090.1_CBS6413 | 84.7 | 92.8 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:216250-217017:+ | gene-YDL136W_CENPK1137D | rna-NM_001180251.2_CENPK1137D | cds-NP_010090.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:213275-214041:+ | gene-YDL136W_EthanolRed | rna-NM_001180251.2_EthanolRed | cds-NP_010090.1_EthanolRed | 99.1 | 99.1 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:218807-219565:+ | gene-YDL136W_FaliES1 | rna-NM_001180251.2_FaliES1 | cds-NP_010090.1_FaliES1 | 84.7 | 92.8 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000032.1:1-758:- | gene-YDL136W_JAY291 | rna-NM_001180251.2_JAY291 | cds-NP_010090.1_JAY291 | 96.9 | 97.2 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:217163-217930:+ | gene-YDL136W_MUCL30387 | rna-NM_001180251.2_MUCL30387 | cds-NP_010090.1_MUCL30387 | 87.1 | 95.6 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:208031-208798:+ | gene-YDL136W_MUCL30388 | rna-NM_001180251.2_MUCL30388 | cds-NP_010090.1_MUCL30388 | 87.1 | 95.6 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:201172-201930:+ | gene-YDL136W_MUCL39482 | rna-NM_001180251.2_MUCL39482 | cds-NP_010090.1_MUCL39482 | 84.7 | 92.8 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | MBVV01000205.1:1-695:- | gene-YDL136W_MUCL42920 | rna-NM_001180251.2_MUCL42920 | cds-NP_010090.1_MUCL42920 | 80.0 | 80.0 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:217523-218290:+ | gene-YDL136W_NCIM3186 | rna-NM_001180251.2_NCIM3186 | cds-NP_010090.1_NCIM3186 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:201141-201886:+ | gene-YDL136W_NCYC1407 | rna-NM_001180251.2_NCYC1407 | cds-NP_010090.1_NCYC1407 | 83.2 | 90.1 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:208403-209171:+ | gene-YDL136W_PE2H3 | rna-NM_001180251.2_PE2H3 | cds-NP_010090.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:208407-209175:+ | gene-YDL136W_PE2H4 | rna-NM_001180251.2_PE2H4 | cds-NP_010090.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:217600-218367:+ | gene-YDL136W_S288C | rna-NM_001180251.2_S288C | cds-NP_010090.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000043.1:83166-83935:+ | gene-YDL136W_SA1 | rna-NM_001180251.2_SA1 | cds-NP_010090.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:218568-219326:+ | gene-YDL136W_ThermosaccDry | rna-NM_001180251.2_ThermosaccDry | cds-NP_010090.1_ThermosaccDry | 84.7 | 92.8 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:220376-221145:+ | gene-YDL136W_VR1 | rna-NM_001180251.2_VR1 | cds-NP_010090.1_VR1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000006.1:216683-217451:+ | gene-YDL136W_ZTW1 | rna-NM_001180251.2_ZTW1 | cds-NP_010090.1_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:218761-219532:+ | gene-YDL136W_Sparadoxus | rna-NM_001180251.2_Sparadoxus | cds-NP_010090.1_Sparadoxus | 98.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |