Gene name: RPL34B
Reference locus (S288C): YIL052C
Gene biotype: protein_coding
Description: Ribosomal 60S subunit protein L34B; homologous to mammalian ribosomal protein L34, no bacterial homolog; RPL34B has a paralog, RPL34A, that arose from the whole genome duplication
Top 10 interactors (score): RPL11B (0.999); RPL3 (0.999); RPL25 (0.999); RPS26B (0.999); RPS6A (0.999); RPL27A (0.999); RPL14B (0.999); RPL22A (0.999); RPL2A (0.999); RPS22A (0.999); RPS20 (0.999); RPS13 (0.999); RPL11A (0.999); RPS21A (0.999); RPS25B (0.999); RPL39 (0.999); RPL42A (0.999); RPL19B (0.999); RPL8A (0.999); RPL32 (0.999)
Homologues (species, bitscore): RPL34 (Homo sapiens, 114.8); Rpl34 (Mus musculus, 115.5); rpl34 (Danio rerio, 114.0); rpl34 (Xenopus tropicalis, 116.7); RpL34a (Drosophila melanogaster, 125.2); rpl-34 (Caenorhabditis elegans, 115.9); RPL34 (Arabidopsis thaliana, 111.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005303.1:253055-253892:- | gene-YIL052C_AKU4011 | rna-NM_001179402.1_AKU4011 | cds-NP_012212.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000164.1:114493-115331:- | gene-YIL052C_BG1 | rna-NM_001179402.1_BG1 | cds-NP_012212.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005511.1:259308-260145:- | gene-YIL052C_Bruggeman | rna-NM_001179402.1_Bruggeman | cds-NP_012212.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005527.1:246969-247807:- | gene-YIL052C_CAT1 | rna-NM_001179402.1_CAT1 | cds-NP_012212.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005367.1:252884-253721:- | gene-YIL052C_CBS1585 | rna-NM_001179402.1_CBS1585 | cds-NP_012212.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005351.1:248180-249018:- | gene-YIL052C_CBS436 | rna-NM_001179402.1_CBS436 | cds-NP_012212.1_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005335.1:249495-250332:- | gene-YIL052C_CBS6412 | rna-NM_001179402.1_CBS6412 | cds-NP_012212.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005319.1:245050-245887:- | gene-YIL052C_CBS6413 | rna-NM_001179402.1_CBS6413 | cds-NP_012212.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001530.1:247931-248769:- | gene-YIL052C_CENPK1137D | rna-NM_001179402.1_CENPK1137D | cds-NP_012212.1_CENPK1137D | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005479.1:236972-237809:- | gene-YIL052C_EthanolRed | rna-NM_001179402.1_EthanolRed | cds-NP_012212.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005543.1:254511-255348:- | gene-YIL052C_FaliES1 | rna-NM_001179402.1_FaliES1 | cds-NP_012212.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000365.1:43531-44369:+ | gene-YIL052C_JAY291 | rna-NM_001179402.1_JAY291 | cds-NP_012212.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005415.1:256202-257039:- | gene-YIL052C_MUCL30387 | rna-NM_001179402.1_MUCL30387 | cds-NP_012212.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005447.1:252805-253642:- | gene-YIL052C_MUCL30388 | rna-NM_001179402.1_MUCL30388 | cds-NP_012212.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005287.1:253726-254563:- | gene-YIL052C_MUCL39482 | rna-NM_001179402.1_MUCL39482 | cds-NP_012212.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005431.1:256341-257178:- | gene-YIL052C_MUCL42920 | rna-NM_001179402.1_MUCL42920 | cds-NP_012212.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011818.1:256226-257063:- | gene-YIL052C_NCIM3186 | rna-NM_001179402.1_NCIM3186 | cds-NP_012212.1_NCIM3186 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005271.1:258000-258837:- | gene-YIL052C_NCYC1407 | rna-NM_001179402.1_NCYC1407 | cds-NP_012212.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994148.1:251239-252077:- | gene-YIL052C_PE2H3 | rna-NM_001179402.1_PE2H3 | cds-NP_012212.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999880.1:245952-246790:- | gene-YIL052C_PE2H4 | rna-NM_001179402.1_PE2H4 | cds-NP_012212.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001141.2:256226-257063:- | gene-YIL052C_S288C | rna-NM_001179402.1_S288C | cds-NP_012212.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000031.1:69107-69945:+ | gene-YIL052C_SA1 | rna-NM_001179402.1_SA1 | cds-NP_012212.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005495.1:253180-254017:- | gene-YIL052C_ThermosaccDry | rna-NM_001179402.1_ThermosaccDry | cds-NP_012212.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005463.1:250357-251195:- | gene-YIL052C_VR1 | rna-NM_001179402.1_VR1 | cds-NP_012212.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000019.1:227025-227862:- | gene-YIL052C_ZTW1 | rna-NM_001179402.1_ZTW1 | cds-NP_012212.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047495.1:249179-249982:- | gene-YIL052C_Sparadoxus | rna-NM_001179402.1_Sparadoxus | cds-NP_012212.1_Sparadoxus | 97.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |