Gene name: RPL34A
Reference locus (S288C): YER056C-A
Gene biotype: protein_coding
Description: Ribosomal 60S subunit protein L34A; homologous to mammalian ribosomal protein L34, no bacterial homolog; RPL34A has a paralog, RPL34B, that arose from the whole genome duplication
Top 10 interactors (score): RPS11B (0.999); RPS14A (0.999); RPS15 (0.999); RPL8B (0.999); RPL2B (0.999); RPL6B (0.999); RPS3 (0.999); RPS2 (0.999); RPS19B (0.999); RPL20A (0.999); RPL35A (0.999); RPL40B (0.999); RPL9B (0.999); RPS16A (0.999); RPL31A (0.999); RPS9B (0.999); RPL26A (0.999); RPL28 (0.999); RPL37B (0.999); RPL12A (0.999)
Homologues (species, bitscore): RPL34 (Homo sapiens, 114.8); Rpl34 (Mus musculus, 115.5); rpl34 (Danio rerio, 114.0); rpl34 (Xenopus tropicalis, 116.3); RpL34a (Drosophila melanogaster, 124.8); rpl-34 (Caenorhabditis elegans, 115.5); RPL34 (Arabidopsis thaliana, 112.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005299.1:263222-263984:- | gene-YER056C-A_AKU4011 | rna-NM_001180036.1_AKU4011 | cds-NP_010977.2_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000011.1:161794-162556:+ | gene-YER056C-A_BG1 | rna-NM_001180036.1_BG1 | cds-NP_010977.2_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005507.1:272529-273294:- | gene-YER056C-A_Bruggeman | rna-NM_001180036.1_Bruggeman | cds-NP_010977.2_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005523.1:266174-266936:- | gene-YER056C-A_CAT1 | rna-NM_001180036.1_CAT1 | cds-NP_010977.2_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005363.1:263078-263840:- | gene-YER056C-A_CBS1585 | rna-NM_001180036.1_CBS1585 | cds-NP_010977.2_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005347.1:264982-265747:- | gene-YER056C-A_CBS436 | rna-NM_001180036.1_CBS436 | cds-NP_010977.2_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005331.1:262548-263310:- | gene-YER056C-A_CBS6412 | rna-NM_001180036.1_CBS6412 | cds-NP_010977.2_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005315.1:268554-269316:- | gene-YER056C-A_CBS6413 | rna-NM_001180036.1_CBS6413 | cds-NP_010977.2_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001526.1:267283-268045:- | gene-YER056C-A_CENPK1137D | rna-NM_001180036.1_CENPK1137D | cds-NP_010977.2_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005475.1:263562-264324:- | gene-YER056C-A_EthanolRed | rna-NM_001180036.1_EthanolRed | cds-NP_010977.2_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005539.1:264015-264777:- | gene-YER056C-A_FaliES1 | rna-NM_001180036.1_FaliES1 | cds-NP_010977.2_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000382.1:7723-8485:+ | gene-YER056C-A_JAY291 | rna-NM_001180036.1_JAY291 | cds-NP_010977.2_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005411.1:267965-268730:- | gene-YER056C-A_MUCL30387 | rna-NM_001180036.1_MUCL30387 | cds-NP_010977.2_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005443.1:263646-264408:- | gene-YER056C-A_MUCL30388 | rna-NM_001180036.1_MUCL30388 | cds-NP_010977.2_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005283.1:262113-262875:- | gene-YER056C-A_MUCL39482 | rna-NM_001180036.1_MUCL39482 | cds-NP_010977.2_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005427.1:269174-269936:- | gene-YER056C-A_MUCL42920 | rna-NM_001180036.1_MUCL42920 | cds-NP_010977.2_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011814.1:269422-270184:- | gene-YER056C-A_NCIM3186 | rna-NM_001180036.1_NCIM3186 | cds-NP_010977.2_NCIM3186 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005267.1:267176-267938:- | gene-YER056C-A_NCYC1407 | rna-NM_001180036.1_NCYC1407 | cds-NP_010977.2_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994144.1:277826-278588:- | gene-YER056C-A_PE2H3 | rna-NM_001180036.1_PE2H3 | cds-NP_010977.2_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999876.1:267767-268529:- | gene-YER056C-A_PE2H4 | rna-NM_001180036.1_PE2H4 | cds-NP_010977.2_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001137.3:269423-270185:- | gene-YER056C-A_S288C | rna-NM_001180036.1_S288C | cds-NP_010977.2_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000059.1:55946-56708:- | gene-YER056C-A_SA1 | rna-NM_001180036.1_SA1 | cds-NP_010977.2_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005491.1:264811-265573:- | gene-YER056C-A_ThermosaccDry | rna-NM_001180036.1_ThermosaccDry | cds-NP_010977.2_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005459.1:264509-265271:- | gene-YER056C-A_VR1 | rna-NM_001180036.1_VR1 | cds-NP_010977.2_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000009.1:261993-262755:- | gene-YER056C-A_ZTW1 | rna-NM_001180036.1_ZTW1 | cds-NP_010977.2_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047491.1:265852-266609:- | gene-YER056C-A_Sparadoxus | rna-NM_001180036.1_Sparadoxus | cds-NP_010977.2_Sparadoxus | 96.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |