Gene name: RPL33B
Reference locus (S288C): YOR234C
Gene biotype: protein_coding
Description: Ribosomal 60S subunit protein L33B; rpl33b null mutant exhibits normal growth while rpl33a rpl33b double null mutant is inviable; homologous to mammalian ribosomal protein L35A, no bacterial homolog; RPL33B has a paralog, RPL33A, that arose from the whole genome duplication
Top 10 interactors (score): RPL33A (0.999); RPS22A (0.999); RPL14B (0.999); RPL27A (0.999); RPS26B (0.999); RPS6A (0.999); RPL3 (0.999); RPL11B (0.999); RPS29B (0.999); RPS19A (0.999); RPL24A (0.999); RPL17A (0.999); RPS26A (0.999); RPL23A (0.999); RPS27A (0.999); RPS17B (0.999); RPS21B (0.999); RPL17B (0.999); RPL20B (0.999); RPL29 (0.999)
Homologues (species, bitscore): RPL35A (Homo sapiens, 108.2); Rpl35a (Mus musculus, 109.4); rpl35a (Danio rerio, 105.1); rpl35a (Xenopus tropicalis, 108.2); RpL35A (Drosophila melanogaster, 94.4); rpl-33 (Caenorhabditis elegans, 99.4); AT1G41880 (Arabidopsis thaliana, 128.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:769324-770176:- | gene-YOR234C_AKU4011 | rna-NM_001183653.3_AKU4011 | cds-NP_014877.3_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000123.1:171367-172217:- | gene-YOR234C_BG1 | rna-NM_001183653.3_BG1 | cds-NP_014877.3_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:754794-755644:- | gene-YOR234C_Bruggeman | rna-NM_001183653.3_Bruggeman | cds-NP_014877.3_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:755445-756294:- | gene-YOR234C_CAT1 | rna-NM_001183653.3_CAT1 | cds-NP_014877.3_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:752313-753165:- | gene-YOR234C_CBS1585 | rna-NM_001183653.3_CBS1585 | cds-NP_014877.3_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:751011-751861:- | gene-YOR234C_CBS436 | rna-NM_001183653.3_CBS436 | cds-NP_014877.3_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005341.1:749432-750284:- | gene-YOR234C_CBS6412 | rna-NM_001183653.3_CBS6412 | cds-NP_014877.3_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:758072-758924:- | gene-YOR234C_CBS6413 | rna-NM_001183653.3_CBS6413 | cds-NP_014877.3_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:778317-779167:- | gene-YOR234C_CENPK1137D | rna-NM_001183653.3_CENPK1137D | cds-NP_014877.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005485.1:745444-746296:- | gene-YOR234C_EthanolRed | rna-NM_001183653.3_EthanolRed | cds-NP_014877.3_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:750843-751695:- | gene-YOR234C_FaliES1 | rna-NM_001183653.3_FaliES1 | cds-NP_014877.3_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000381.1:75141-75991:+ | gene-YOR234C_JAY291 | rna-NM_001183653.3_JAY291 | cds-NP_014877.3_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:758117-758967:- | gene-YOR234C_MUCL30387 | rna-NM_001183653.3_MUCL30387 | cds-NP_014877.3_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:766183-767033:- | gene-YOR234C_MUCL30388 | rna-NM_001183653.3_MUCL30388 | cds-NP_014877.3_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:759643-760495:- | gene-YOR234C_MUCL39482 | rna-NM_001183653.3_MUCL39482 | cds-NP_014877.3_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:769235-770085:- | gene-YOR234C_MUCL42920 | rna-NM_001183653.3_MUCL42920 | cds-NP_014877.3_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:778444-779294:- | gene-YOR234C_NCIM3186 | rna-NM_001183653.3_NCIM3186 | cds-NP_014877.3_NCIM3186 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:759742-760594:- | gene-YOR234C_NCYC1407 | rna-NM_001183653.3_NCYC1407 | cds-NP_014877.3_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:759047-759897:- | gene-YOR234C_PE2H3 | rna-NM_001183653.3_PE2H3 | cds-NP_014877.3_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:769424-770274:- | gene-YOR234C_PE2H4 | rna-NM_001183653.3_PE2H4 | cds-NP_014877.3_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:778555-779405:- | gene-YOR234C_S288C | rna-NM_001183653.3_S288C | cds-NP_014877.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000006.1:188548-189398:- | gene-YOR234C_SA1 | rna-NM_001183653.3_SA1 | cds-NP_014877.3_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:750026-750878:- | gene-YOR234C_ThermosaccDry | rna-NM_001183653.3_ThermosaccDry | cds-NP_014877.3_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:813487-814337:- | gene-YOR234C_VR1 | rna-NM_001183653.3_VR1 | cds-NP_014877.3_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000032.1:482947-483797:- | gene-YOR234C_ZTW1 | rna-NM_001183653.3_ZTW1 | cds-NP_014877.3_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:755922-756788:- | gene-YOR234C_Sparadoxus | rna-NM_001183653.3_Sparadoxus | cds-NP_014877.3_Sparadoxus | 94.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |