Gene name: RPL33A
Reference locus (S288C): YPL143W
Gene biotype: protein_coding
Description: Ribosomal 60S subunit protein L33A; N-terminally acetylated; rpl33a null mutant exhibits slow growth while rpl33a rpl33b double null mutant is inviable; homologous to mammalian ribosomal protein L35A, no bacterial homolog; RPL33A has a paralog, RPL33B, that arose from the whole genome duplication
Top 10 interactors (score): RPS7A (0.999); RPL9A (0.999); RPL12B (0.999); RPS27B (0.999); RPL38 (0.999); RPL31B (0.999); RPL37A (0.999); RPS5 (0.999); RPL23B (0.999); RPS18B (0.999); RPL36A (0.999); RPS6B (0.999); RPL26B (0.999); RPS0B (0.999); RPL7B (0.999); RPS24A (0.999); RPS24B (0.999); RPL1B (0.999); RPL5 (0.999); RPL43B (0.999)
Homologues (species, bitscore): RPL35A (Homo sapiens, 107.1); Rpl35a (Mus musculus, 108.2); rpl35a (Danio rerio, 104.0); rpl35a (Xenopus tropicalis, 107.1); RpL35A (Drosophila melanogaster, 94.7); rpl-33 (Caenorhabditis elegans, 101.3); AT1G41880 (Arabidopsis thaliana, 127.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:259776-260624:+ | gene-YPL143W_AKU4011 | rna-NM_001183957.1_AKU4011 | cds-NP_015182.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000069.1:465462-466310:+ | gene-YPL143W_BG1 | rna-NM_001183957.1_BG1 | cds-NP_015182.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:285772-286619:+ | gene-YPL143W_Bruggeman | rna-NM_001183957.1_Bruggeman | cds-NP_015182.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:282449-283297:+ | gene-YPL143W_CAT1 | rna-NM_001183957.1_CAT1 | cds-NP_015182.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:263842-264690:+ | gene-YPL143W_CBS1585 | rna-NM_001183957.1_CBS1585 | cds-NP_015182.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:278516-279364:+ | gene-YPL143W_CBS436 | rna-NM_001183957.1_CBS436 | cds-NP_015182.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:268517-269365:+ | gene-YPL143W_CBS6412 | rna-NM_001183957.1_CBS6412 | cds-NP_015182.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:260481-261329:+ | gene-YPL143W_CBS6413 | rna-NM_001183957.1_CBS6413 | cds-NP_015182.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:282024-282872:+ | gene-YPL143W_CENPK1137D | rna-NM_001183957.1_CENPK1137D | cds-NP_015182.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:258467-259315:+ | gene-YPL143W_EthanolRed | rna-NM_001183957.1_EthanolRed | cds-NP_015182.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:266059-266907:+ | gene-YPL143W_FaliES1 | rna-NM_001183957.1_FaliES1 | cds-NP_015182.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000007.1:98949-99795:- | gene-YPL143W_JAY291 | rna-NM_001183957.1_JAY291 | cds-NP_015182.1_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:277015-277863:+ | gene-YPL143W_MUCL30387 | rna-NM_001183957.1_MUCL30387 | cds-NP_015182.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:275029-275876:+ | gene-YPL143W_MUCL30388 | rna-NM_001183957.1_MUCL30388 | cds-NP_015182.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:257171-258019:+ | gene-YPL143W_MUCL39482 | rna-NM_001183957.1_MUCL39482 | cds-NP_015182.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:314413-315260:+ | gene-YPL143W_MUCL42920 | rna-NM_001183957.1_MUCL42920 | cds-NP_015182.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:282105-282953:+ | gene-YPL143W_NCIM3186 | rna-NM_001183957.1_NCIM3186 | cds-NP_015182.1_NCIM3186 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:263631-264479:+ | gene-YPL143W_NCYC1407 | rna-NM_001183957.1_NCYC1407 | cds-NP_015182.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:271077-271925:+ | gene-YPL143W_PE2H3 | rna-NM_001183957.1_PE2H3 | cds-NP_015182.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:270707-271554:+ | gene-YPL143W_PE2H4 | rna-NM_001183957.1_PE2H4 | cds-NP_015182.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:282122-282970:+ | gene-YPL143W_S288C | rna-NM_001183957.1_S288C | cds-NP_015182.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000012.1:90719-91566:- | gene-YPL143W_SA1 | rna-NM_001183957.1_SA1 | cds-NP_015182.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:265857-266705:+ | gene-YPL143W_ThermosaccDry | rna-NM_001183957.1_ThermosaccDry | cds-NP_015182.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:280833-281681:+ | gene-YPL143W_VR1 | rna-NM_001183957.1_VR1 | cds-NP_015182.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:265187-266035:+ | gene-YPL143W_ZTW1 | rna-NM_001183957.1_ZTW1 | cds-NP_015182.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:266850-267716:+ | gene-YPL143W_Sparadoxus | rna-NM_001183957.1_Sparadoxus | cds-NP_015182.1_Sparadoxus | 98.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |