Gene name: RPL31B
Reference locus (S288C): YLR406C
Gene biotype: protein_coding
Description: Ribosomal 60S subunit protein L31B; associates with karyopherin Sxm1p; loss of both Rpl31p and Rpl39p confers lethality; homologous to mammalian ribosomal protein L31, no bacterial homolog; RPL31B has a paralog, RPL31A, that arose from the whole genome duplication
Top 10 interactors (score): RPL34B (0.999); RPL20A (0.999); RPS19B (0.999); RPL9B (0.999); RPL8B (0.999); RPL26A (0.999); RPL28 (0.999); RPL37B (0.999); RPL36A (0.999); RPL26B (0.999); RPL43B (0.999); RPL5 (0.999); RPS10A (0.999); RPL19A (0.999); RPL33B (0.999); RPS27B (0.999); RPL38 (0.999); RPL37A (0.999); RPS5 (0.999); RPL30 (0.999)
Homologues (species, bitscore): RPL31 (Homo sapiens, 130.6); Rpl31 (Mus musculus, 141.4); rpl31 (Danio rerio, 144.1); rpl31 (Xenopus tropicalis, 139.0); RpL31 (Drosophila melanogaster, 124.4); rpl-31 (Caenorhabditis elegans, 118.6); AT4G26230 (Arabidopsis thaliana, 121.7)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:880600-881290:- | gene-YLR406C_AKU4011 | rna-NM_001182294.3_AKU4011 | cds-NP_013510.3_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000048.1:112743-113433:- | gene-YLR406C_BG1 | rna-NM_001182294.3_BG1 | cds-NP_013510.3_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:918905-919595:- | gene-YLR406C_Bruggeman | rna-NM_001182294.3_Bruggeman | cds-NP_013510.3_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:914429-915119:- | gene-YLR406C_CAT1 | rna-NM_001182294.3_CAT1 | cds-NP_013510.3_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:916195-916885:- | gene-YLR406C_CBS1585 | rna-NM_001182294.3_CBS1585 | cds-NP_013510.3_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:899834-900524:- | gene-YLR406C_CBS436 | rna-NM_001182294.3_CBS436 | cds-NP_013510.3_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:952237-952927:- | gene-YLR406C_CBS6412 | rna-NM_001182294.3_CBS6412 | cds-NP_013510.3_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:916487-917177:- | gene-YLR406C_CBS6413 | rna-NM_001182294.3_CBS6413 | cds-NP_013510.3_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:915876-916566:- | gene-YLR406C_CENPK1137D | rna-NM_001182294.3_CENPK1137D | cds-NP_013510.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:873142-873832:- | gene-YLR406C_EthanolRed | rna-NM_001182294.3_EthanolRed | cds-NP_013510.3_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:902452-903142:- | gene-YLR406C_FaliES1 | rna-NM_001182294.3_FaliES1 | cds-NP_013510.3_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000434.1:55610-56300:- | gene-YLR406C_JAY291 | rna-NM_001182294.3_JAY291 | cds-NP_013510.3_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:917771-918461:- | gene-YLR406C_MUCL30387 | rna-NM_001182294.3_MUCL30387 | cds-NP_013510.3_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:923869-924559:- | gene-YLR406C_MUCL30388 | rna-NM_001182294.3_MUCL30388 | cds-NP_013510.3_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:917415-918105:- | gene-YLR406C_MUCL39482 | rna-NM_001182294.3_MUCL39482 | cds-NP_013510.3_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:912071-912761:- | gene-YLR406C_MUCL42920 | rna-NM_001182294.3_MUCL42920 | cds-NP_013510.3_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:931039-931729:- | gene-YLR406C_NCIM3186 | rna-NM_001182294.3_NCIM3186 | cds-NP_013510.3_NCIM3186 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:926596-927286:- | gene-YLR406C_NCYC1407 | rna-NM_001182294.3_NCYC1407 | cds-NP_013510.3_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:912991-913681:- | gene-YLR406C_PE2H3 | rna-NM_001182294.3_PE2H3 | cds-NP_013510.3_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:912735-913425:- | gene-YLR406C_PE2H4 | rna-NM_001182294.3_PE2H4 | cds-NP_013510.3_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:931065-931755:- | gene-YLR406C_S288C | rna-NM_001182294.3_S288C | cds-NP_013510.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000007.1:116933-117623:+ | gene-YLR406C_SA1 | rna-NM_001182294.3_SA1 | cds-NP_013510.3_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:905531-906221:- | gene-YLR406C_ThermosaccDry | rna-NM_001182294.3_ThermosaccDry | cds-NP_013510.3_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:918081-918771:- | gene-YLR406C_VR1 | rna-NM_001182294.3_VR1 | cds-NP_013510.3_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000025.1:242249-242939:- | gene-YLR406C_ZTW1 | rna-NM_001182294.3_ZTW1 | cds-NP_013510.3_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:891091-891782:- | gene-YLR406C_Sparadoxus | rna-NM_001182294.3_Sparadoxus | cds-NP_013510.3_Sparadoxus | 93.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |