Gene name: RPL31A
Reference locus (S288C): YDL075W
Gene biotype: protein_coding
Description: Ribosomal 60S subunit protein L31A; associates with karyopherin Sxm1p; loss of both Rpl31p and Rpl39p confers lethality; homologous to mammalian ribosomal protein L31, no bacterial homolog; RPL31A has a paralog, RPL31B, that arose from the whole genome duplication
Top 10 interactors (score): RPL42B (0.999); RPS28B (0.999); RPS25A (0.999); RPL18A (0.999); RPS1A (0.999); RPL21A (0.999); RPL24B (0.999); RPS0A (0.999); RPL43A (0.999); RPS29A (0.999); RPS1B (0.999); RPL25 (0.999); RPL22A (0.999); RPS30B (0.999); RPS17A (0.999); RPS23B (0.999); RPS20 (0.999); RPL11A (0.999); RPS21A (0.999); RPL8A (0.999)
Homologues (species, bitscore): RPL31 (Homo sapiens, 130.2); Rpl31 (Mus musculus, 141.4); rpl31 (Danio rerio, 143.7); rpl31 (Xenopus tropicalis, 138.7); RpL31 (Drosophila melanogaster, 124.4); rpl-31 (Caenorhabditis elegans, 119.0); AT4G26230 (Arabidopsis thaliana, 121.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:306826-307588:+ | gene-YDL075W_AKU4011 | rna-NM_001180134.1_AKU4011 | cds-NP_010208.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000102.1:242340-243102:- | gene-YDL075W_BG1 | rna-NM_001180134.1_BG1 | cds-NP_010208.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:324638-325400:+ | gene-YDL075W_Bruggeman | rna-NM_001180134.1_Bruggeman | cds-NP_010208.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:321000-321762:+ | gene-YDL075W_CAT1 | rna-NM_001180134.1_CAT1 | cds-NP_010208.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:305098-305860:+ | gene-YDL075W_CBS1585 | rna-NM_001180134.1_CBS1585 | cds-NP_010208.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:321778-322540:+ | gene-YDL075W_CBS436 | rna-NM_001180134.1_CBS436 | cds-NP_010208.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:303526-304289:+ | gene-YDL075W_CBS6412 | rna-NM_001180134.1_CBS6412 | cds-NP_010208.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:323151-323913:+ | gene-YDL075W_CBS6413 | rna-NM_001180134.1_CBS6413 | cds-NP_010208.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:321049-321811:+ | gene-YDL075W_CENPK1137D | rna-NM_001180134.1_CENPK1137D | cds-NP_010208.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:317864-318626:+ | gene-YDL075W_EthanolRed | rna-NM_001180134.1_EthanolRed | cds-NP_010208.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:323836-324598:+ | gene-YDL075W_FaliES1 | rna-NM_001180134.1_FaliES1 | cds-NP_010208.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000010.1:93904-94666:+ | gene-YDL075W_JAY291 | rna-NM_001180134.1_JAY291 | cds-NP_010208.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:322028-322790:+ | gene-YDL075W_MUCL30387 | rna-NM_001180134.1_MUCL30387 | cds-NP_010208.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:313154-313916:+ | gene-YDL075W_MUCL30388 | rna-NM_001180134.1_MUCL30388 | cds-NP_010208.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:306203-306965:+ | gene-YDL075W_MUCL39482 | rna-NM_001180134.1_MUCL39482 | cds-NP_010208.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:228214-228976:+ | gene-YDL075W_MUCL42920 | rna-NM_001180134.1_MUCL42920 | cds-NP_010208.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:322149-322911:+ | gene-YDL075W_NCIM3186 | rna-NM_001180134.1_NCIM3186 | cds-NP_010208.1_NCIM3186 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:306217-306979:+ | gene-YDL075W_NCYC1407 | rna-NM_001180134.1_NCYC1407 | cds-NP_010208.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:313022-313784:+ | gene-YDL075W_PE2H3 | rna-NM_001180134.1_PE2H3 | cds-NP_010208.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:313001-313763:+ | gene-YDL075W_PE2H4 | rna-NM_001180134.1_PE2H4 | cds-NP_010208.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:322226-322988:+ | gene-YDL075W_S288C | rna-NM_001180134.1_S288C | cds-NP_010208.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000010.1:111933-112695:- | gene-YDL075W_SA1 | rna-NM_001180134.1_SA1 | cds-NP_010208.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:323347-324109:+ | gene-YDL075W_ThermosaccDry | rna-NM_001180134.1_ThermosaccDry | cds-NP_010208.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:325419-326181:+ | gene-YDL075W_VR1 | rna-NM_001180134.1_VR1 | cds-NP_010208.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000006.1:321261-322023:+ | gene-YDL075W_ZTW1 | rna-NM_001180134.1_ZTW1 | cds-NP_010208.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:323380-324142:+ | gene-YDL075W_Sparadoxus | rna-NM_001180134.1_Sparadoxus | cds-NP_010208.1_Sparadoxus | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |