Gene name: RPL30
Reference locus (S288C): YGL030W
Gene biotype: protein_coding
Description: Ribosomal 60S subunit protein L30; involved in pre-rRNA processing in the nucleolus; autoregulates splicing of its transcript; homologous to mammalian ribosomal protein L30, no bacterial homolog
Top 10 interactors (score): RPS21B (0.999); RPL39 (0.999); RPP2A (0.999); RPS30A (0.999); RPL20B (0.999); RPL17B (0.999); RPL29 (0.999); RPS17B (0.999); RPS27A (0.999); RPS26A (0.999); RPL23A (0.999); RPL17A (0.999); RLP7 (0.999); RPL40A (0.999); RPL33A (0.999); RPS8B (0.999); RPL16B (0.999); RPS19A (0.999); RPL24A (0.999); RPP0 (0.999)
Homologues (species, bitscore): RPL30 (Homo sapiens, 132.5); Rpl30 (Mus musculus, 132.5); rpl30 (Danio rerio, 130.2); RpL30 (Drosophila melanogaster, 138.3); rpl-30 (Caenorhabditis elegans, 131.7); AT3G18740 (Arabidopsis thaliana, 132.9)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:441145-441692:+ | gene-YGL030W_AKU4011 | rna-NM_001180895.1_AKU4011 | cds-NP_011485.1_AKU4011 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000060.1:134441-134988:- | gene-YGL030W_BG1 | rna-NM_001180895.1_BG1 | cds-NP_011485.1_BG1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:441908-442455:+ | gene-YGL030W_Bruggeman | rna-NM_001180895.1_Bruggeman | cds-NP_011485.1_Bruggeman | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:440150-440697:+ | gene-YGL030W_CAT1 | rna-NM_001180895.1_CAT1 | cds-NP_011485.1_CAT1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:442616-443163:+ | gene-YGL030W_CBS1585 | rna-NM_001180895.1_CBS1585 | cds-NP_011485.1_CBS1585 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:437012-437559:+ | gene-YGL030W_CBS436 | rna-NM_001180895.1_CBS436 | cds-NP_011485.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:435221-435768:+ | gene-YGL030W_CBS6412 | rna-NM_001180895.1_CBS6412 | cds-NP_011485.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:439290-439837:+ | gene-YGL030W_CBS6413 | rna-NM_001180895.1_CBS6413 | cds-NP_011485.1_CBS6413 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:438929-439476:+ | gene-YGL030W_CENPK1137D | rna-NM_001180895.1_CENPK1137D | cds-NP_011485.1_CENPK1137D | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:429489-430036:+ | gene-YGL030W_EthanolRed | rna-NM_001180895.1_EthanolRed | cds-NP_011485.1_EthanolRed | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:432727-433274:+ | gene-YGL030W_FaliES1 | rna-NM_001180895.1_FaliES1 | cds-NP_011485.1_FaliES1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000177.1:1461-2008:+ | gene-YGL030W_JAY291 | rna-NM_001180895.1_JAY291 | cds-NP_011485.1_JAY291 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:439113-439660:+ | gene-YGL030W_MUCL30387 | rna-NM_001180895.1_MUCL30387 | cds-NP_011485.1_MUCL30387 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:441911-442458:+ | gene-YGL030W_MUCL30388 | rna-NM_001180895.1_MUCL30388 | cds-NP_011485.1_MUCL30388 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:438455-439002:+ | gene-YGL030W_MUCL39482 | rna-NM_001180895.1_MUCL39482 | cds-NP_011485.1_MUCL39482 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:447910-448457:+ | gene-YGL030W_MUCL42920 | rna-NM_001180895.1_MUCL42920 | cds-NP_011485.1_MUCL42920 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:439091-439638:+ | gene-YGL030W_NCIM3186 | rna-NM_001180895.1_NCIM3186 | cds-NP_011485.1_NCIM3186 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:432465-433012:+ | gene-YGL030W_NCYC1407 | rna-NM_001180895.1_NCYC1407 | cds-NP_011485.1_NCYC1407 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:435126-435673:+ | gene-YGL030W_PE2H3 | rna-NM_001180895.1_PE2H3 | cds-NP_011485.1_PE2H3 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:440176-440723:+ | gene-YGL030W_PE2H4 | rna-NM_001180895.1_PE2H4 | cds-NP_011485.1_PE2H4 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:439091-439638:+ | gene-YGL030W_S288C | rna-NM_001180895.1_S288C | cds-NP_011485.1_S288C | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000021.1:115959-116506:- | gene-YGL030W_SA1 | rna-NM_001180895.1_SA1 | cds-NP_011485.1_SA1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:452093-452640:+ | gene-YGL030W_ThermosaccDry | rna-NM_001180895.1_ThermosaccDry | cds-NP_011485.1_ThermosaccDry | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:542164-542711:+ | gene-YGL030W_VR1 | rna-NM_001180895.1_VR1 | cds-NP_011485.1_VR1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000014.1:430687-431234:+ | gene-YGL030W_ZTW1 | rna-NM_001180895.1_ZTW1 | cds-NP_011485.1_ZTW1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:439838-440393:+ | gene-YGL030W_Sparadoxus | rna-NM_001180895.1_Sparadoxus | cds-NP_011485.1_Sparadoxus | 97.4 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |