Gene name: RPL3
Reference locus (S288C): YOR063W
Gene biotype: protein_coding
Description: Ribosomal 60S subunit protein L3; homologous to mammalian ribosomal protein L3 and bacterial L3; plays an important role in function of eIF5B in stimulating 3' end processing of 18S rRNA in context of 80S ribosomes that have not yet engaged in translation; involved in replication and maintenance of killer double stranded RNA virus; Belongs to the universal ribosomal protein uL3 family
Top 10 interactors (score): RPS29A (0.999); RPS1A (0.999); RPL18A (0.999); RPS0A (0.999); RPL24B (0.999); RPL21A (0.999); RPP1B (0.999); RPL25 (0.999); RPL22A (0.999); RPS1B (0.999); ARX1 (0.999); RPL8A (0.999); RPS17A (0.999); EFT2 (0.999); RPS23B (0.999); NOP7 (0.999); RPS30B (0.999); RPS20 (0.999); RPL11A (0.999); RPS21A (0.999)
Homologues (species, bitscore): RPL3 (Homo sapiens, 551.6); Rpl3 (Mus musculus, 552.4); rpl3 (Danio rerio, 545.4); rpl3 (Xenopus tropicalis, 561.6); RpL3 (Drosophila melanogaster, 533.5); rpl-3 (Caenorhabditis elegans, 542.0); RPL3B (Arabidopsis thaliana, 525.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:429023-430186:+ | gene-YOR063W_AKU4011 | rna-NM_001183482.1_AKU4011 | cds-NP_014706.1_AKU4011 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000088.1:2571-3734:- | gene-YOR063W_BG1 | rna-NM_001183482.1_BG1 | cds-NP_014706.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:431732-432895:+ | gene-YOR063W_Bruggeman | rna-NM_001183482.1_Bruggeman | cds-NP_014706.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:430483-431646:+ | gene-YOR063W_CAT1 | rna-NM_001183482.1_CAT1 | cds-NP_014706.1_CAT1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:423709-424872:+ | gene-YOR063W_CBS1585 | rna-NM_001183482.1_CBS1585 | cds-NP_014706.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:428023-429186:+ | gene-YOR063W_CBS436 | rna-NM_001183482.1_CBS436 | cds-NP_014706.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005341.1:423033-424196:+ | gene-YOR063W_CBS6412 | rna-NM_001183482.1_CBS6412 | cds-NP_014706.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:430319-431482:+ | gene-YOR063W_CBS6413 | rna-NM_001183482.1_CBS6413 | cds-NP_014706.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:444670-445833:+ | gene-YOR063W_CENPK1137D | rna-NM_001183482.1_CENPK1137D | cds-NP_014706.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005485.1:425735-426898:+ | gene-YOR063W_EthanolRed | rna-NM_001183482.1_EthanolRed | cds-NP_014706.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:429071-430234:+ | gene-YOR063W_FaliES1 | rna-NM_001183482.1_FaliES1 | cds-NP_014706.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000407.1:14127-15290:- | gene-YOR063W_JAY291 | rna-NM_001183482.1_JAY291 | cds-NP_014706.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:436521-437684:+ | gene-YOR063W_MUCL30387 | rna-NM_001183482.1_MUCL30387 | cds-NP_014706.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:440925-442088:+ | gene-YOR063W_MUCL30388 | rna-NM_001183482.1_MUCL30388 | cds-NP_014706.1_MUCL30388 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:431194-432357:+ | gene-YOR063W_MUCL39482 | rna-NM_001183482.1_MUCL39482 | cds-NP_014706.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:446339-447502:+ | gene-YOR063W_MUCL42920 | rna-NM_001183482.1_MUCL42920 | cds-NP_014706.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:444575-445738:+ | gene-YOR063W_NCIM3186 | rna-NM_001183482.1_NCIM3186 | cds-NP_014706.1_NCIM3186 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:438113-439276:+ | gene-YOR063W_NCYC1407 | rna-NM_001183482.1_NCYC1407 | cds-NP_014706.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:436721-437884:+ | gene-YOR063W_PE2H3 | rna-NM_001183482.1_PE2H3 | cds-NP_014706.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:447102-448265:+ | gene-YOR063W_PE2H4 | rna-NM_001183482.1_PE2H4 | cds-NP_014706.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:444686-445849:+ | gene-YOR063W_S288C | rna-NM_001183482.1_S288C | cds-NP_014706.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000001.1:412949-414112:+ | gene-YOR063W_SA1 | rna-NM_001183482.1_SA1 | cds-NP_014706.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:428219-429382:+ | gene-YOR063W_ThermosaccDry | rna-NM_001183482.1_ThermosaccDry | cds-NP_014706.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:429486-430649:+ | gene-YOR063W_VR1 | rna-NM_001183482.1_VR1 | cds-NP_014706.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000032.1:162221-163384:+ | gene-YOR063W_ZTW1 | rna-NM_001183482.1_ZTW1 | cds-NP_014706.1_ZTW1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:433791-434954:+ | gene-YOR063W_Sparadoxus | rna-NM_001183482.1_Sparadoxus | cds-NP_014706.1_Sparadoxus | 97.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |