Gene name: RPL2A
Reference locus (S288C): YFR031C-A
Gene biotype: protein_coding
Description: Ribosomal 60S subunit protein L2A; homologous to mammalian ribosomal protein L2 and bacterial L2; RPL2A has a paralog, RPL2B, that arose from the whole genome duplication
Top 10 interactors (score): RPL5 (0.999); RPL1B (0.999); RPL43B (0.999); RPL23B (0.999); RPL36A (0.999); RPS18B (0.999); RLP24 (0.999); RPS6B (0.999); RPL26B (0.999); RPL7B (0.999); RPS0B (0.999); RPL37A (0.999); RPL38 (0.999); NSA2 (0.999); RPS5 (0.999); RPL14A (0.999); RPS7A (0.999); RPL12B (0.999); RPL9A (0.999); RPS27B (0.999)
Homologues (species, bitscore): RPL8 (Homo sapiens, 392.9); Rpl8 (Mus musculus, 392.9); rpl8 (Danio rerio, 393.7); rpl8 (Xenopus tropicalis, 392.5); RpL8 (Drosophila melanogaster, 382.5); rpl-2 (Caenorhabditis elegans, 359.4); EMB2296 (Arabidopsis thaliana, 360.5)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005300.1:210662-211573:- | gene-YFR031C-A_AKU4011 | rna-NM_001180030.3_AKU4011 | cds-NP_116688.3_AKU4011 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000071.1:49469-50380:+ | gene-YFR031C-A_BG1 | rna-NM_001180030.3_BG1 | cds-NP_116688.3_BG1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005508.1:214319-215230:- | gene-YFR031C-A_Bruggeman | rna-NM_001180030.3_Bruggeman | cds-NP_116688.3_Bruggeman | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005524.1:216295-217206:- | gene-YFR031C-A_CAT1 | rna-NM_001180030.3_CAT1 | cds-NP_116688.3_CAT1 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005364.1:212154-213065:- | gene-YFR031C-A_CBS1585 | rna-NM_001180030.3_CBS1585 | cds-NP_116688.3_CBS1585 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005348.1:185117-186028:- | gene-YFR031C-A_CBS436 | rna-NM_001180030.3_CBS436 | cds-NP_116688.3_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005332.1:211231-212142:- | gene-YFR031C-A_CBS6412 | rna-NM_001180030.3_CBS6412 | cds-NP_116688.3_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005316.1:213889-214800:- | gene-YFR031C-A_CBS6413 | rna-NM_001180030.3_CBS6413 | cds-NP_116688.3_CBS6413 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001527.1:216606-217517:- | gene-YFR031C-A_CENPK1137D | rna-NM_001180030.3_CENPK1137D | cds-NP_116688.3_CENPK1137D | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005476.1:209769-210680:- | gene-YFR031C-A_EthanolRed | rna-NM_001180030.3_EthanolRed | cds-NP_116688.3_EthanolRed | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005540.1:211420-212331:- | gene-YFR031C-A_FaliES1 | rna-NM_001180030.3_FaliES1 | cds-NP_116688.3_FaliES1 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000453.1:14554-15465:- | gene-YFR031C-A_JAY291 | rna-NM_001180030.3_JAY291 | cds-NP_116688.3_JAY291 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005412.1:214754-215665:- | gene-YFR031C-A_MUCL30387 | rna-NM_001180030.3_MUCL30387 | cds-NP_116688.3_MUCL30387 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005444.1:210246-211157:- | gene-YFR031C-A_MUCL30388 | rna-NM_001180030.3_MUCL30388 | cds-NP_116688.3_MUCL30388 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005284.1:210072-210983:- | gene-YFR031C-A_MUCL39482 | rna-NM_001180030.3_MUCL39482 | cds-NP_116688.3_MUCL39482 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005428.1:209421-210332:- | gene-YFR031C-A_MUCL42920 | rna-NM_001180030.3_MUCL42920 | cds-NP_116688.3_MUCL42920 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011815.1:220506-221417:- | gene-YFR031C-A_NCIM3186 | rna-NM_001180030.3_NCIM3186 | cds-NP_116688.3_NCIM3186 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005268.1:210954-211865:- | gene-YFR031C-A_NCYC1407 | rna-NM_001180030.3_NCYC1407 | cds-NP_116688.3_NCYC1407 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994145.1:252961-253872:- | gene-YFR031C-A_PE2H3 | rna-NM_001180030.3_PE2H3 | cds-NP_116688.3_PE2H3 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999877.1:252509-253420:- | gene-YFR031C-A_PE2H4 | rna-NM_001180030.3_PE2H4 | cds-NP_116688.3_PE2H4 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001138.5:220507-221418:- | gene-YFR031C-A_S288C | rna-NM_001180030.3_S288C | cds-NP_116688.3_S288C | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000011.1:103051-103962:+ | gene-YFR031C-A_SA1 | rna-NM_001180030.3_SA1 | cds-NP_116688.3_SA1 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005492.1:210577-211488:- | gene-YFR031C-A_ThermosaccDry | rna-NM_001180030.3_ThermosaccDry | cds-NP_116688.3_ThermosaccDry | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005460.1:226333-227244:- | gene-YFR031C-A_VR1 | rna-NM_001180030.3_VR1 | cds-NP_116688.3_VR1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000013.1:141048-141959:- | gene-YFR031C-A_ZTW1 | rna-NM_001180030.3_ZTW1 | cds-NP_116688.3_ZTW1 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047492.1:234230-235139:- | gene-YFR031C-A_Sparadoxus | rna-NM_001180030.3_Sparadoxus | cds-NP_116688.3_Sparadoxus | 97.2 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |