Gene name: RPL29
Reference locus (S288C): YFR032C-A
Gene biotype: protein_coding
Description: Ribosomal 60S subunit protein L29; not essential for translation, but required for proper joining of large and small ribosomal subunits and for normal translation rate; homologous to mammalian ribosomal protein L29, no bacterial homolog; Belongs to the eukaryotic ribosomal protein eL29 family
Top 10 interactors (score): RPS29B (0.999); RPL11B (0.999); RPL3 (0.999); RPS1B (0.999); RPS22A (0.999); RPL2A (0.999); RPS23B (0.999); RPS17A (0.999); RPS25B (0.999); RPS21A (0.999); RPL11A (0.999); RPS13 (0.999); RPS20 (0.999); RPL4A (0.999); RPS6A (0.999); RPS26B (0.999); RPL25 (0.999); RPL22A (0.999); RPL14B (0.999); RPL27A (0.999)
Homologues (species, bitscore): RPL29 (Homo sapiens, 72.8); Rpl29 (Mus musculus, 72.0); RPL29 (Danio rerio, 72.0); rpl29 (Xenopus tropicalis, 73.2); RpL29 (Drosophila melanogaster, 54.7); rpl-29 (Caenorhabditis elegans, 60.5); AT3G06680 (Arabidopsis thaliana, 63.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005300.1:213407-213586:- | gene-YFR032C-A_AKU4011 | rna-NM_001184311.3_AKU4011 | cds-NP_116690.3_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000071.1:47450-47629:+ | gene-YFR032C-A_BG1 | rna-NM_001184311.3_BG1 | cds-NP_116690.3_BG1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005508.1:217075-217254:- | gene-YFR032C-A_Bruggeman | rna-NM_001184311.3_Bruggeman | cds-NP_116690.3_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005524.1:219040-219219:- | gene-YFR032C-A_CAT1 | rna-NM_001184311.3_CAT1 | cds-NP_116690.3_CAT1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005364.1:214899-215078:- | gene-YFR032C-A_CBS1585 | rna-NM_001184311.3_CBS1585 | cds-NP_116690.3_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005348.1:187867-188046:- | gene-YFR032C-A_CBS436 | rna-NM_001184311.3_CBS436 | cds-NP_116690.3_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005332.1:213976-214155:- | gene-YFR032C-A_CBS6412 | rna-NM_001184311.3_CBS6412 | cds-NP_116690.3_CBS6412 | 98.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005316.1:216634-216813:- | gene-YFR032C-A_CBS6413 | rna-NM_001184311.3_CBS6413 | cds-NP_116690.3_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001527.1:219356-219535:- | gene-YFR032C-A_CENPK1137D | rna-NM_001184311.3_CENPK1137D | cds-NP_116690.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005476.1:212515-212694:- | gene-YFR032C-A_EthanolRed | rna-NM_001184311.3_EthanolRed | cds-NP_116690.3_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005540.1:214166-214345:- | gene-YFR032C-A_FaliES1 | rna-NM_001184311.3_FaliES1 | cds-NP_116690.3_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000453.1:17305-17484:- | gene-YFR032C-A_JAY291 | rna-NM_001184311.3_JAY291 | cds-NP_116690.3_JAY291 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005412.1:217517-217696:- | gene-YFR032C-A_MUCL30387 | rna-NM_001184311.3_MUCL30387 | cds-NP_116690.3_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005444.1:213003-213182:- | gene-YFR032C-A_MUCL30388 | rna-NM_001184311.3_MUCL30388 | cds-NP_116690.3_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005284.1:212817-212996:- | gene-YFR032C-A_MUCL39482 | rna-NM_001184311.3_MUCL39482 | cds-NP_116690.3_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005428.1:212434-212613:- | gene-YFR032C-A_MUCL42920 | rna-NM_001184311.3_MUCL42920 | cds-NP_116690.3_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011815.1:223257-223436:- | gene-YFR032C-A_NCIM3186 | rna-NM_001184311.3_NCIM3186 | cds-NP_116690.3_NCIM3186 | 91.1 | 100.0 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005268.1:213699-213878:- | gene-YFR032C-A_NCYC1407 | rna-NM_001184311.3_NCYC1407 | cds-NP_116690.3_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994145.1:255712-255891:- | gene-YFR032C-A_PE2H3 | rna-NM_001184311.3_PE2H3 | cds-NP_116690.3_PE2H3 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999877.1:255260-255439:- | gene-YFR032C-A_PE2H4 | rna-NM_001184311.3_PE2H4 | cds-NP_116690.3_PE2H4 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001138.5:223258-223437:- | gene-YFR032C-A_S288C | rna-NM_001184311.3_S288C | cds-NP_116690.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000011.1:101038-101217:+ | gene-YFR032C-A_SA1 | rna-NM_001184311.3_SA1 | cds-NP_116690.3_SA1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005492.1:213323-213502:- | gene-YFR032C-A_ThermosaccDry | rna-NM_001184311.3_ThermosaccDry | cds-NP_116690.3_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005460.1:229084-229263:- | gene-YFR032C-A_VR1 | rna-NM_001184311.3_VR1 | cds-NP_116690.3_VR1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000013.1:143793-143972:- | gene-YFR032C-A_ZTW1 | rna-NM_001184311.3_ZTW1 | cds-NP_116690.3_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047492.1:236962-237141:- | gene-YFR032C-A_Sparadoxus | rna-NM_001184311.3_Sparadoxus | cds-NP_116690.3_Sparadoxus | 98.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |