Gene name: RPL28
Reference locus (S288C): YGL103W
Gene biotype: protein_coding
Description: Ribosomal 60S subunit protein L28; homologous to mammalian ribosomal protein L27A and bacterial L15; may have peptidyl transferase activity; can mutate to cycloheximide resistance
Top 10 interactors (score): RPS4B (0.999); RPL30 (0.999); RPL15A (0.999); RPL16A (0.999); RPS18A (0.999); RPL13A (0.999); RPL27B (0.999); RPL1A (0.999); RPS14B (0.999); RPL6A (0.999); RPL35A (0.999); RPL40B (0.999); RPL9B (0.999); RPS2 (0.999); RPS3 (0.999); RPL20A (0.999); RPL8B (0.999); RPP2B (0.999); RPL37B (0.999); RPL12A (0.999)
Homologues (species, bitscore): RPL27A (Homo sapiens, 188.7); Gm7536 (Mus musculus, 189.5); rpl27a (Xenopus tropicalis, 188.0); RpL27A (Drosophila melanogaster, 176.4); Y37E3.8 (Caenorhabditis elegans, 180.3); AT1G70600 (Arabidopsis thaliana, 189.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:314282-315243:+ | gene-YGL103W_AKU4011 | rna-NM_001180968.1_AKU4011 | cds-NP_011412.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000132.1:90473-91434:- | gene-YGL103W_BG1 | rna-NM_001180968.1_BG1 | cds-NP_011412.1_BG1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:316436-317397:+ | gene-YGL103W_Bruggeman | rna-NM_001180968.1_Bruggeman | cds-NP_011412.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:311973-312934:+ | gene-YGL103W_CAT1 | rna-NM_001180968.1_CAT1 | cds-NP_011412.1_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:317606-318567:+ | gene-YGL103W_CBS1585 | rna-NM_001180968.1_CBS1585 | cds-NP_011412.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:311903-312864:+ | gene-YGL103W_CBS436 | rna-NM_001180968.1_CBS436 | cds-NP_011412.1_CBS436 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:302299-303260:+ | gene-YGL103W_CBS6412 | rna-NM_001180968.1_CBS6412 | cds-NP_011412.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:311904-312865:+ | gene-YGL103W_CBS6413 | rna-NM_001180968.1_CBS6413 | cds-NP_011412.1_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:311148-312108:+ | gene-YGL103W_CENPK1137D | rna-NM_001180968.1_CENPK1137D | cds-NP_011412.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:303353-304314:+ | gene-YGL103W_EthanolRed | rna-NM_001180968.1_EthanolRed | cds-NP_011412.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:305908-306869:+ | gene-YGL103W_FaliES1 | rna-NM_001180968.1_FaliES1 | cds-NP_011412.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000046.1:39949-40910:- | gene-YGL103W_JAY291 | rna-NM_001180968.1_JAY291 | cds-NP_011412.1_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:313406-314367:+ | gene-YGL103W_MUCL30387 | rna-NM_001180968.1_MUCL30387 | cds-NP_011412.1_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:316490-317451:+ | gene-YGL103W_MUCL30388 | rna-NM_001180968.1_MUCL30388 | cds-NP_011412.1_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:314119-315080:+ | gene-YGL103W_MUCL39482 | rna-NM_001180968.1_MUCL39482 | cds-NP_011412.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:318069-319030:+ | gene-YGL103W_MUCL42920 | rna-NM_001180968.1_MUCL42920 | cds-NP_011412.1_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:310967-311927:+ | gene-YGL103W_NCIM3186 | rna-NM_001180968.1_NCIM3186 | cds-NP_011412.1_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:305609-306570:+ | gene-YGL103W_NCYC1407 | rna-NM_001180968.1_NCYC1407 | cds-NP_011412.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:307008-307969:+ | gene-YGL103W_PE2H3 | rna-NM_001180968.1_PE2H3 | cds-NP_011412.1_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:312006-312967:+ | gene-YGL103W_PE2H4 | rna-NM_001180968.1_PE2H4 | cds-NP_011412.1_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:310967-311927:+ | gene-YGL103W_S288C | rna-NM_001180968.1_S288C | cds-NP_011412.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000064.1:55752-56712:+ | gene-YGL103W_SA1 | rna-NM_001180968.1_SA1 | cds-NP_011412.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:306120-307081:+ | gene-YGL103W_ThermosaccDry | rna-NM_001180968.1_ThermosaccDry | cds-NP_011412.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:415725-416685:+ | gene-YGL103W_VR1 | rna-NM_001180968.1_VR1 | cds-NP_011412.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000014.1:303519-304479:+ | gene-YGL103W_ZTW1 | rna-NM_001180968.1_ZTW1 | cds-NP_011412.1_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:309872-310842:+ | gene-YGL103W_Sparadoxus | rna-NM_001180968.1_Sparadoxus | cds-NP_011412.1_Sparadoxus | 97.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |