Gene name: RPL27B
Reference locus (S288C): YDR471W
Gene biotype: protein_coding
Description: Ribosomal 60S subunit protein L27B; homologous to mammalian ribosomal protein L27, no bacterial homolog; RPL27B has a paralog, RPL27A, that arose from the whole genome duplication
Top 10 interactors (score): RPL23B (0.999); RPL36A (0.999); RPS18B (0.999); RLP24 (0.999); RPL26B (0.999); RPL28 (0.999); RPL26A (0.999); RPS9B (0.999); RPS28A (0.999); RPS19B (0.999); RPL31A (0.999); RPS16A (0.999); RPL36B (0.999); RPL6B (0.999); RPL2B (0.999); RPS15 (0.999); RPS14A (0.999); RPS11B (0.999); RPP1A (0.999); RPL43B (0.999)
Homologues (species, bitscore): RPL27 (Homo sapiens, 167.5); Rpl27 (Mus musculus, 167.5); rpl27 (Danio rerio, 168.3); rpl27 (Xenopus tropicalis, 164.1); RpL27 (Drosophila melanogaster, 148.3); rpl-27 (Caenorhabditis elegans, 159.5); AT4G15000 (Arabidopsis thaliana, 157.5)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:1341695-1342490:+ | gene-YDR471W_AKU4011 | rna-NM_001180779.1_AKU4011 | cds-NP_010759.1_AKU4011 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000039.1:216796-217590:+ | gene-YDR471W_BG1 | rna-NM_001180779.1_BG1 | cds-NP_010759.1_BG1 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:1373103-1373897:+ | gene-YDR471W_Bruggeman | rna-NM_001180779.1_Bruggeman | cds-NP_010759.1_Bruggeman | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:1350246-1351040:+ | gene-YDR471W_CAT1 | rna-NM_001180779.1_CAT1 | cds-NP_010759.1_CAT1 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:1335991-1336786:+ | gene-YDR471W_CBS1585 | rna-NM_001180779.1_CBS1585 | cds-NP_010759.1_CBS1585 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:1355355-1356149:+ | gene-YDR471W_CBS436 | rna-NM_001180779.1_CBS436 | cds-NP_010759.1_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:1331618-1332413:+ | gene-YDR471W_CBS6412 | rna-NM_001180779.1_CBS6412 | cds-NP_010759.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:1354629-1355424:+ | gene-YDR471W_CBS6413 | rna-NM_001180779.1_CBS6413 | cds-NP_010759.1_CBS6413 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:1400466-1401260:+ | gene-YDR471W_CENPK1137D | rna-NM_001180779.1_CENPK1137D | cds-NP_010759.1_CENPK1137D | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:1345032-1345827:+ | gene-YDR471W_EthanolRed | rna-NM_001180779.1_EthanolRed | cds-NP_010759.1_EthanolRed | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:1348585-1349380:+ | gene-YDR471W_FaliES1 | rna-NM_001180779.1_FaliES1 | cds-NP_010759.1_FaliES1 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000026.1:46838-47632:+ | gene-YDR471W_JAY291 | rna-NM_001180779.1_JAY291 | cds-NP_010759.1_JAY291 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:1355595-1356389:+ | gene-YDR471W_MUCL30387 | rna-NM_001180779.1_MUCL30387 | cds-NP_010759.1_MUCL30387 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:1337617-1338411:+ | gene-YDR471W_MUCL30388 | rna-NM_001180779.1_MUCL30388 | cds-NP_010759.1_MUCL30388 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:1327475-1328270:+ | gene-YDR471W_MUCL39482 | rna-NM_001180779.1_MUCL39482 | cds-NP_010759.1_MUCL39482 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:1270271-1271065:+ | gene-YDR471W_MUCL42920 | rna-NM_001180779.1_MUCL42920 | cds-NP_010759.1_MUCL42920 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:1401693-1402487:+ | gene-YDR471W_NCIM3186 | rna-NM_001180779.1_NCIM3186 | cds-NP_010759.1_NCIM3186 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:1341248-1342043:+ | gene-YDR471W_NCYC1407 | rna-NM_001180779.1_NCYC1407 | cds-NP_010759.1_NCYC1407 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:1352089-1352883:+ | gene-YDR471W_PE2H3 | rna-NM_001180779.1_PE2H3 | cds-NP_010759.1_PE2H3 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:1357663-1358457:+ | gene-YDR471W_PE2H4 | rna-NM_001180779.1_PE2H4 | cds-NP_010759.1_PE2H4 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:1401770-1402564:+ | gene-YDR471W_S288C | rna-NM_001180779.1_S288C | cds-NP_010759.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000004.1:214597-215391:- | gene-YDR471W_SA1 | rna-NM_001180779.1_SA1 | cds-NP_010759.1_SA1 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:1352807-1353602:+ | gene-YDR471W_ThermosaccDry | rna-NM_001180779.1_ThermosaccDry | cds-NP_010759.1_ThermosaccDry | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:1368533-1369327:+ | gene-YDR471W_VR1 | rna-NM_001180779.1_VR1 | cds-NP_010759.1_VR1 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000008.1:395480-396273:+ | gene-YDR471W_ZTW1 | rna-NM_001180779.1_ZTW1 | cds-NP_010759.1_ZTW1 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:1355846-1356633:+ | gene-YDR471W_Sparadoxus | rna-NM_001180779.1_Sparadoxus | cds-NP_010759.1_Sparadoxus | 95.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |