Gene name: RPL27A
Reference locus (S288C): YHR010W
Gene biotype: protein_coding
Description: Ribosomal 60S subunit protein L27A; homologous to mammalian ribosomal protein L27, no bacterial homolog; RPL27A has a paralog, RPL27B, that arose from the whole genome duplication
Top 10 interactors (score): RPL29 (0.999); RPS6A (0.999); RPS26B (0.999); RPL14B (0.999); RPS8B (0.999); RPL33A (0.999); RPP0 (0.999); RPL24A (0.999); RPL16B (0.999); RPS19A (0.999); RPS30A (0.999); RPL20B (0.999); RPL17B (0.999); RPL40A (0.999); RPS21B (0.999); RPS17B (0.999); RPS26A (0.999); RPL23A (0.999); RPS27A (0.999); RPL17A (0.999)
Homologues (species, bitscore): RPL27 (Homo sapiens, 166.8); Rpl27 (Mus musculus, 166.8); rpl27 (Danio rerio, 167.5); rpl27 (Xenopus tropicalis, 163.7); RpL27 (Drosophila melanogaster, 147.5); rpl-27 (Caenorhabditis elegans, 162.2); AT4G15000 (Arabidopsis thaliana, 154.5)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005302.1:114806-115777:+ | gene-YHR010W_AKU4011 | rna-NM_001179140.1_AKU4011 | cds-NP_011874.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000053.1:34607-35581:+ | gene-YHR010W_BG1 | rna-NM_001179140.1_BG1 | cds-NP_011874.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005510.1:121643-122614:+ | gene-YHR010W_Bruggeman | rna-NM_001179140.1_Bruggeman | cds-NP_011874.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005526.1:115874-116848:+ | gene-YHR010W_CAT1 | rna-NM_001179140.1_CAT1 | cds-NP_011874.1_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005366.1:115391-116362:+ | gene-YHR010W_CBS1585 | rna-NM_001179140.1_CBS1585 | cds-NP_011874.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005350.1:108211-109185:+ | gene-YHR010W_CBS436 | rna-NM_001179140.1_CBS436 | cds-NP_011874.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005334.1:114988-115959:+ | gene-YHR010W_CBS6412 | rna-NM_001179140.1_CBS6412 | cds-NP_011874.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005318.1:114724-115695:+ | gene-YHR010W_CBS6413 | rna-NM_001179140.1_CBS6413 | cds-NP_011874.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001529.1:119678-120652:+ | gene-YHR010W_CENPK1137D | rna-NM_001179140.1_CENPK1137D | cds-NP_011874.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005478.1:114608-115579:+ | gene-YHR010W_EthanolRed | rna-NM_001179140.1_EthanolRed | cds-NP_011874.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005542.1:115580-116551:+ | gene-YHR010W_FaliES1 | rna-NM_001179140.1_FaliES1 | cds-NP_011874.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000064.1:5663-6637:- | gene-YHR010W_JAY291 | rna-NM_001179140.1_JAY291 | cds-NP_011874.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005414.1:120187-121158:+ | gene-YHR010W_MUCL30387 | rna-NM_001179140.1_MUCL30387 | cds-NP_011874.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005446.1:121070-122041:+ | gene-YHR010W_MUCL30388 | rna-NM_001179140.1_MUCL30388 | cds-NP_011874.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005286.1:114418-115389:+ | gene-YHR010W_MUCL39482 | rna-NM_001179140.1_MUCL39482 | cds-NP_011874.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005430.1:119230-120204:+ | gene-YHR010W_MUCL42920 | rna-NM_001179140.1_MUCL42920 | cds-NP_011874.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011817.1:126403-127374:+ | gene-YHR010W_NCIM3186 | rna-NM_001179140.1_NCIM3186 | cds-NP_011874.1_NCIM3186 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005270.1:113832-114803:+ | gene-YHR010W_NCYC1407 | rna-NM_001179140.1_NCYC1407 | cds-NP_011874.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994147.1:116036-117010:+ | gene-YHR010W_PE2H3 | rna-NM_001179140.1_PE2H3 | cds-NP_011874.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999879.1:123477-124451:+ | gene-YHR010W_PE2H4 | rna-NM_001179140.1_PE2H4 | cds-NP_011874.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001140.6:126521-127492:+ | gene-YHR010W_S288C | rna-NM_001179140.1_S288C | cds-NP_011874.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000075.1:19382-20356:- | gene-YHR010W_SA1 | rna-NM_001179140.1_SA1 | cds-NP_011874.1_SA1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005494.1:116675-117646:+ | gene-YHR010W_ThermosaccDry | rna-NM_001179140.1_ThermosaccDry | cds-NP_011874.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005462.1:122198-123172:+ | gene-YHR010W_VR1 | rna-NM_001179140.1_VR1 | cds-NP_011874.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000017.1:107913-108884:+ | gene-YHR010W_ZTW1 | rna-NM_001179140.1_ZTW1 | cds-NP_011874.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047494.1:114307-115280:+ | gene-YHR010W_Sparadoxus | rna-NM_001179140.1_Sparadoxus | cds-NP_011874.1_Sparadoxus | 99.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |