Gene name: RPL26A
Reference locus (S288C): YLR344W
Gene biotype: protein_coding
Description: Ribosomal 60S subunit protein L26A; binds to 5.8S rRNA; non-essential even when paralog is also deleted; deletion has minimal affections on ribosome biosynthesis; homologous to mammalian ribosomal protein L26 and bacterial L24; RPL26A has a paralog, RPL26B, that arose from the whole genome duplication
Top 10 interactors (score): RPS5 (0.999); RPL14A (0.999); RPL12B (0.999); RPL9A (0.999); RPS7A (0.999); RPS27B (0.999); RPS19B (0.999); RPL31A (0.999); RPS16A (0.999); RPL36B (0.999); RPL6B (0.999); RPL2B (0.999); RPS15 (0.999); RPS14A (0.999); RPS11B (0.999); RPP1A (0.999); RPL28 (0.999); RPS9B (0.999); RPS28A (0.999); RPS9A (0.999)
Homologues (species, bitscore): RPL26L1 (Homo sapiens, 137.9); Rpl26 (Mus musculus, 137.9); rpl26 (Danio rerio, 138.3); rpl26 (Xenopus tropicalis, 137.5); RpL26 (Drosophila melanogaster, 139.8); rpl-26 (Caenorhabditis elegans, 151.4); AT3G49910 (Arabidopsis thaliana, 151.0)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:768835-769665:+ | gene-YLR344W_AKU4011 | rna-NM_001182233.1_AKU4011 | cds-NP_013448.1_AKU4011 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000048.1:973-1803:+ | gene-YLR344W_BG1 | rna-NM_001182233.1_BG1 | cds-NP_013448.1_BG1 | 98.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:805655-806486:+ | gene-YLR344W_Bruggeman | rna-NM_001182233.1_Bruggeman | cds-NP_013448.1_Bruggeman | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:802702-803532:+ | gene-YLR344W_CAT1 | rna-NM_001182233.1_CAT1 | cds-NP_013448.1_CAT1 | 98.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:803887-804717:+ | gene-YLR344W_CBS1585 | rna-NM_001182233.1_CBS1585 | cds-NP_013448.1_CBS1585 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:788114-788944:+ | gene-YLR344W_CBS436 | rna-NM_001182233.1_CBS436 | cds-NP_013448.1_CBS436 | 98.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:840885-841715:+ | gene-YLR344W_CBS6412 | rna-NM_001182233.1_CBS6412 | cds-NP_013448.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:804754-805584:+ | gene-YLR344W_CBS6413 | rna-NM_001182233.1_CBS6413 | cds-NP_013448.1_CBS6413 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:803927-804757:+ | gene-YLR344W_CENPK1137D | rna-NM_001182233.1_CENPK1137D | cds-NP_013448.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:761447-762277:+ | gene-YLR344W_EthanolRed | rna-NM_001182233.1_EthanolRed | cds-NP_013448.1_EthanolRed | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:790254-791084:+ | gene-YLR344W_FaliES1 | rna-NM_001182233.1_FaliES1 | cds-NP_013448.1_FaliES1 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000161.1:852-1682:+ | gene-YLR344W_JAY291 | rna-NM_001182233.1_JAY291 | cds-NP_013448.1_JAY291 | 98.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:803636-804467:+ | gene-YLR344W_MUCL30387 | rna-NM_001182233.1_MUCL30387 | cds-NP_013448.1_MUCL30387 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:808982-809813:+ | gene-YLR344W_MUCL30388 | rna-NM_001182233.1_MUCL30388 | cds-NP_013448.1_MUCL30388 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:805106-805936:+ | gene-YLR344W_MUCL39482 | rna-NM_001182233.1_MUCL39482 | cds-NP_013448.1_MUCL39482 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:800382-801213:+ | gene-YLR344W_MUCL42920 | rna-NM_001182233.1_MUCL42920 | cds-NP_013448.1_MUCL42920 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:819286-820116:+ | gene-YLR344W_NCIM3186 | rna-NM_001182233.1_NCIM3186 | cds-NP_013448.1_NCIM3186 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:814326-815156:+ | gene-YLR344W_NCYC1407 | rna-NM_001182233.1_NCYC1407 | cds-NP_013448.1_NCYC1407 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:801271-802101:+ | gene-YLR344W_PE2H3 | rna-NM_001182233.1_PE2H3 | cds-NP_013448.1_PE2H3 | 98.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:801015-801845:+ | gene-YLR344W_PE2H4 | rna-NM_001182233.1_PE2H4 | cds-NP_013448.1_PE2H4 | 98.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:819312-820142:+ | gene-YLR344W_S288C | rna-NM_001182233.1_S288C | cds-NP_013448.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000007.1:228517-229347:- | gene-YLR344W_SA1 | rna-NM_001182233.1_SA1 | cds-NP_013448.1_SA1 | 98.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:793090-793920:+ | gene-YLR344W_ThermosaccDry | rna-NM_001182233.1_ThermosaccDry | cds-NP_013448.1_ThermosaccDry | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:806347-807177:+ | gene-YLR344W_VR1 | rna-NM_001182233.1_VR1 | cds-NP_013448.1_VR1 | 98.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000025.1:130534-131364:+ | gene-YLR344W_ZTW1 | rna-NM_001182233.1_ZTW1 | cds-NP_013448.1_ZTW1 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:779152-779977:+ | gene-YLR344W_Sparadoxus | rna-NM_001182233.1_Sparadoxus | cds-NP_013448.1_Sparadoxus | 96.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |