Gene name: RPL25
Reference locus (S288C): YOL127W
Gene biotype: protein_coding
Description: Ribosomal 60S subunit protein L25; primary rRNA-binding ribosomal protein component of large ribosomal subunit; binds to 25S rRNA via a conserved C-terminal motif; homologous to mammalian ribosomal protein L23A and bacterial L23; Belongs to the universal ribosomal protein uL23 family
Top 10 interactors (score): RPS19A (0.999); RPL16B (0.999); RPP0 (0.999); RPL20B (0.999); RPS22B (0.999); RPL29 (0.999); RPS30A (0.999); RPL17B (0.999); RPL24A (0.999); RLP7 (0.999); RPL40A (0.999); RPS21B (0.999); RPS17B (0.999); RPL23A (0.999); RPS26A (0.999); RPS27A (0.999); RPL17A (0.999); RPS8B (0.999); RPL33A (0.999); TIF6 (0.999)
Homologues (species, bitscore): RPL23A (Homo sapiens, 180.3); Rpl23a (Mus musculus, 180.3); rpl23a (Danio rerio, 176.0); rpl23a (Xenopus tropicalis, 178.7); RpL23A (Drosophila melanogaster, 159.1); rpl-25.2 (Caenorhabditis elegans, 159.8); RPL23AB (Arabidopsis thaliana, 151.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:69005-69847:+ | gene-YOL127W_AKU4011 | rna-NM_001183381.1_AKU4011 | cds-NP_014514.1_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000172.1:34627-35469:+ | gene-YOL127W_BG1 | rna-NM_001183381.1_BG1 | cds-NP_014514.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:70281-71119:+ | gene-YOL127W_Bruggeman | rna-NM_001183381.1_Bruggeman | cds-NP_014514.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:69238-70080:+ | gene-YOL127W_CAT1 | rna-NM_001183381.1_CAT1 | cds-NP_014514.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:63481-64323:+ | gene-YOL127W_CBS1585 | rna-NM_001183381.1_CBS1585 | cds-NP_014514.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:69327-70169:+ | gene-YOL127W_CBS436 | rna-NM_001183381.1_CBS436 | cds-NP_014514.1_CBS436 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005341.1:63345-64187:+ | gene-YOL127W_CBS6412 | rna-NM_001183381.1_CBS6412 | cds-NP_014514.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:69813-70655:+ | gene-YOL127W_CBS6413 | rna-NM_001183381.1_CBS6413 | cds-NP_014514.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:80245-81087:+ | gene-YOL127W_CENPK1137D | rna-NM_001183381.1_CENPK1137D | cds-NP_014514.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005485.1:67256-68094:+ | gene-YOL127W_EthanolRed | rna-NM_001183381.1_EthanolRed | cds-NP_014514.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:69285-70123:+ | gene-YOL127W_FaliES1 | rna-NM_001183381.1_FaliES1 | cds-NP_014514.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000329.1:12423-13265:- | gene-YOL127W_JAY291 | rna-NM_001183381.1_JAY291 | cds-NP_014514.1_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:74922-75760:+ | gene-YOL127W_MUCL30387 | rna-NM_001183381.1_MUCL30387 | cds-NP_014514.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:77916-78758:+ | gene-YOL127W_MUCL30388 | rna-NM_001183381.1_MUCL30388 | cds-NP_014514.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:71416-72258:+ | gene-YOL127W_MUCL39482 | rna-NM_001183381.1_MUCL39482 | cds-NP_014514.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:87302-88140:+ | gene-YOL127W_MUCL42920 | rna-NM_001183381.1_MUCL42920 | cds-NP_014514.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:80237-81079:+ | gene-YOL127W_NCIM3186 | rna-NM_001183381.1_NCIM3186 | cds-NP_014514.1_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:77455-78297:+ | gene-YOL127W_NCYC1407 | rna-NM_001183381.1_NCYC1407 | cds-NP_014514.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:55886-56728:+ | gene-YOL127W_PE2H3 | rna-NM_001183381.1_PE2H3 | cds-NP_014514.1_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:72834-73676:+ | gene-YOL127W_PE2H4 | rna-NM_001183381.1_PE2H4 | cds-NP_014514.1_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:80348-81190:+ | gene-YOL127W_S288C | rna-NM_001183381.1_S288C | cds-NP_014514.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000001.1:53776-54618:+ | gene-YOL127W_SA1 | rna-NM_001183381.1_SA1 | cds-NP_014514.1_SA1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:68423-69261:+ | gene-YOL127W_ThermosaccDry | rna-NM_001183381.1_ThermosaccDry | cds-NP_014514.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:69082-69924:+ | gene-YOL127W_VR1 | rna-NM_001183381.1_VR1 | cds-NP_014514.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000031.1:68176-69014:+ | gene-YOL127W_ZTW1 | rna-NM_001183381.1_ZTW1 | cds-NP_014514.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:70873-71718:+ | gene-YOL127W_Sparadoxus | rna-NM_001183381.1_Sparadoxus | cds-NP_014514.1_Sparadoxus | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |