Gene name: RPL23B
Reference locus (S288C): YER117W
Gene biotype: protein_coding
Description: Ribosomal 60S subunit protein L23B; homologous to mammalian ribosomal protein L23 and bacterial L14; RPL23B has a paralog, RPL23A, that arose from the whole genome duplication
Top 10 interactors (score): RPL7A (0.999); RPL35B (0.999); RPL42B (0.999); RPS28B (0.999); RPS25A (0.999); RPS31 (0.999); RPL10 (0.999); ASC1 (0.999); RPS29A (0.999); RPS21A (0.999); RPS20 (0.999); RPL8A (0.999); RPS1B (0.999); RPL25 (0.999); RPL22A (0.999); RPL18A (0.999); RPL21A (0.999); RPL24B (0.999); RPS0A (0.999); RPL43A (0.999)
Homologues (species, bitscore): RPL23 (Homo sapiens, 225.3); Rpl23 (Mus musculus, 225.3); rpl23 (Danio rerio, 224.2); rpl23 (Xenopus tropicalis, 183.0); RpL23 (Drosophila melanogaster, 217.6); rpl-23 (Caenorhabditis elegans, 206.1); RPL23A (Arabidopsis thaliana, 219.5)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005299.1:390646-391530:+ | gene-YER117W_AKU4011 | rna-NM_001179007.3_AKU4011 | cds-NP_011042.3_AKU4011 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000011.1:34090-34974:- | gene-YER117W_BG1 | rna-NM_001179007.3_BG1 | cds-NP_011042.3_BG1 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005507.1:401117-402001:+ | gene-YER117W_Bruggeman | rna-NM_001179007.3_Bruggeman | cds-NP_011042.3_Bruggeman | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005523.1:396358-397242:+ | gene-YER117W_CAT1 | rna-NM_001179007.3_CAT1 | cds-NP_011042.3_CAT1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005363.1:390041-390925:+ | gene-YER117W_CBS1585 | rna-NM_001179007.3_CBS1585 | cds-NP_011042.3_CBS1585 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005347.1:392747-393631:+ | gene-YER117W_CBS436 | rna-NM_001179007.3_CBS436 | cds-NP_011042.3_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005331.1:389119-390003:+ | gene-YER117W_CBS6412 | rna-NM_001179007.3_CBS6412 | cds-NP_011042.3_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005315.1:395963-396847:+ | gene-YER117W_CBS6413 | rna-NM_001179007.3_CBS6413 | cds-NP_011042.3_CBS6413 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001526.1:394506-395390:+ | gene-YER117W_CENPK1137D | rna-NM_001179007.3_CENPK1137D | cds-NP_011042.3_CENPK1137D | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005475.1:390495-391379:+ | gene-YER117W_EthanolRed | rna-NM_001179007.3_EthanolRed | cds-NP_011042.3_EthanolRed | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005539.1:390976-391860:+ | gene-YER117W_FaliES1 | rna-NM_001179007.3_FaliES1 | cds-NP_011042.3_FaliES1 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000276.1:1-308:+ | gene-YER117W_JAY291 | rna-NM_001179007.3_JAY291 | cds-NP_011042.3_JAY291 | 73.4 | 74.3 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005411.1:398065-398949:+ | gene-YER117W_MUCL30387 | rna-NM_001179007.3_MUCL30387 | cds-NP_011042.3_MUCL30387 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005443.1:393011-393895:+ | gene-YER117W_MUCL30388 | rna-NM_001179007.3_MUCL30388 | cds-NP_011042.3_MUCL30388 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005283.1:389066-389950:+ | gene-YER117W_MUCL39482 | rna-NM_001179007.3_MUCL39482 | cds-NP_011042.3_MUCL39482 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005427.1:397557-398441:+ | gene-YER117W_MUCL42920 | rna-NM_001179007.3_MUCL42920 | cds-NP_011042.3_MUCL42920 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011814.1:396768-397652:+ | gene-YER117W_NCIM3186 | rna-NM_001179007.3_NCIM3186 | cds-NP_011042.3_NCIM3186 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005267.1:394599-395483:+ | gene-YER117W_NCYC1407 | rna-NM_001179007.3_NCYC1407 | cds-NP_011042.3_NCYC1407 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994144.1:405144-406028:+ | gene-YER117W_PE2H3 | rna-NM_001179007.3_PE2H3 | cds-NP_011042.3_PE2H3 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999876.1:395085-395969:+ | gene-YER117W_PE2H4 | rna-NM_001179007.3_PE2H4 | cds-NP_011042.3_PE2H4 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001137.3:396769-397653:+ | gene-YER117W_S288C | rna-NM_001179007.3_S288C | cds-NP_011042.3_S288C | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000023.1:106376-107260:+ | gene-YER117W_SA1 | rna-NM_001179007.3_SA1 | cds-NP_011042.3_SA1 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005491.1:391774-392658:+ | gene-YER117W_ThermosaccDry | rna-NM_001179007.3_ThermosaccDry | cds-NP_011042.3_ThermosaccDry | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005459.1:392828-393712:+ | gene-YER117W_VR1 | rna-NM_001179007.3_VR1 | cds-NP_011042.3_VR1 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000009.1:388883-389767:+ | gene-YER117W_ZTW1 | rna-NM_001179007.3_ZTW1 | cds-NP_011042.3_ZTW1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047491.1:392810-393693:+ | gene-YER117W_Sparadoxus | rna-NM_001179007.3_Sparadoxus | cds-NP_011042.3_Sparadoxus | 97.5 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |