Gene name: RPL23A
Reference locus (S288C): YBL087C
Gene biotype: protein_coding
Description: Ribosomal 60S subunit protein L23A; homologous to mammalian ribosomal protein L23 and bacterial L14; RPL23A has a paralog, RPL23B, that arose from the whole genome duplication
Top 10 interactors (score): RPL34A (0.999); RPL19B (0.999); RPL18B (0.999); RPL42A (0.999); RPL3 (0.999); RPL11B (0.999); RPS29B (0.999); RPL14B (0.999); RPS21B (0.999); RPS22A (0.999); RPL39 (0.999); RPL32 (0.999); RPL2A (0.999); RPS13 (0.999); RPL40A (0.999); RPP2A (0.999); RPS26B (0.999); RPL4A (0.999); RPS6A (0.999); RPL27A (0.999)
Homologues (species, bitscore): RPL23 (Homo sapiens, 225.3); Rpl23 (Mus musculus, 225.3); rpl23 (Danio rerio, 224.2); rpl23 (Xenopus tropicalis, 183.0); RpL23 (Drosophila melanogaster, 217.6); rpl-23 (Caenorhabditis elegans, 206.1); RPL23A (Arabidopsis thaliana, 219.5)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:53366-54291:- | gene-YBL087C_AKU4011 | rna-NM_001178327.1_AKU4011 | cds-NP_009466.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000179.1:44064-44981:- | gene-YBL087C_BG1 | rna-NM_001178327.1_BG1 | cds-NP_009466.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005504.1:53994-54911:- | gene-YBL087C_Bruggeman | rna-NM_001178327.1_Bruggeman | cds-NP_009466.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005520.1:55922-56839:- | gene-YBL087C_CAT1 | rna-NM_001178327.1_CAT1 | cds-NP_009466.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:45448-46373:- | gene-YBL087C_CBS1585 | rna-NM_001178327.1_CBS1585 | cds-NP_009466.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:54255-55172:- | gene-YBL087C_CBS436 | rna-NM_001178327.1_CBS436 | cds-NP_009466.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:45239-46165:- | gene-YBL087C_CBS6412 | rna-NM_001178327.1_CBS6412 | cds-NP_009466.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:51526-52452:- | gene-YBL087C_CBS6413 | rna-NM_001178327.1_CBS6413 | cds-NP_009466.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:53477-54394:- | gene-YBL087C_CENPK1137D | rna-NM_001178327.1_CENPK1137D | cds-NP_009466.1_CENPK1137D | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:67619-68544:- | gene-YBL087C_EthanolRed | rna-NM_001178327.1_EthanolRed | cds-NP_009466.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:67748-68673:- | gene-YBL087C_FaliES1 | rna-NM_001178327.1_FaliES1 | cds-NP_009466.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000019.1:1-601:- | gene-YBL087C_JAY291 | rna-NM_001178327.1_JAY291 | cds-NP_009466.1_JAY291 | 23.4 | 23.4 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:53134-54059:- | gene-YBL087C_MUCL30387 | rna-NM_001178327.1_MUCL30387 | cds-NP_009466.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:53806-54731:- | gene-YBL087C_MUCL30388 | rna-NM_001178327.1_MUCL30388 | cds-NP_009466.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:45598-46523:- | gene-YBL087C_MUCL39482 | rna-NM_001178327.1_MUCL39482 | cds-NP_009466.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:52472-53397:- | gene-YBL087C_MUCL42920 | rna-NM_001178327.1_MUCL42920 | cds-NP_009466.1_MUCL42920 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:59619-60536:- | gene-YBL087C_NCIM3186 | rna-NM_001178327.1_NCIM3186 | cds-NP_009466.1_NCIM3186 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:47273-48198:- | gene-YBL087C_NCYC1407 | rna-NM_001178327.1_NCYC1407 | cds-NP_009466.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:53583-54500:- | gene-YBL087C_PE2H3 | rna-NM_001178327.1_PE2H3 | cds-NP_009466.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:51226-52143:- | gene-YBL087C_PE2H4 | rna-NM_001178327.1_PE2H4 | cds-NP_009466.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:59822-60739:- | gene-YBL087C_S288C | rna-NM_001178327.1_S288C | cds-NP_009466.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000004.1:43928-44845:- | gene-YBL087C_SA1 | rna-NM_001178327.1_SA1 | cds-NP_009466.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:67709-68634:- | gene-YBL087C_ThermosaccDry | rna-NM_001178327.1_ThermosaccDry | cds-NP_009466.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:49912-50829:- | gene-YBL087C_VR1 | rna-NM_001178327.1_VR1 | cds-NP_009466.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:44930-45855:- | gene-YBL087C_ZTW1 | rna-NM_001178327.1_ZTW1 | cds-NP_009466.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:79674-80587:- | gene-YBL087C_Sparadoxus | rna-NM_001178327.1_Sparadoxus | cds-NP_009466.1_Sparadoxus | 95.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |