Gene name: RPL22B
Reference locus (S288C): YFL034C-A
Gene biotype: protein_coding
Description: Ribosomal 60S subunit protein L22A; required for translation of long 5' UTR of IME1 mRNA and meiotic entry; homologous to mammalian ribosomal protein L22, no bacterial homolog; RPL22B has a paralog, RPL22A, that arose from the whole genome duplication
Top 10 interactors (score): RPL30 (0.999); RPL15A (0.999); RPS3 (0.999); RPL29 (0.999); RPL32 (0.999); RPL39 (0.999); RPS13 (0.999); RPL5 (0.999); RPL1B (0.999); RPL38 (0.999); RPL28 (0.999); RPL10 (0.999); RPL11A (0.999); RPL22A (0.999); RPL25 (0.999); RPS20 (0.998); RPL7A (0.998); RPL26A (0.998); RPL15B (0.998); RPL42B (0.998)
Homologues (species, bitscore): RPL22L1 (Homo sapiens, 113.2); Rpl22l1 (Mus musculus, 112.5); rpl22 (Danio rerio, 110.9); rpl22 (Xenopus tropicalis, 114.8); RpL22 (Drosophila melanogaster, 97.8); rpl-22 (Caenorhabditis elegans, 90.9); AT5G27770 (Arabidopsis thaliana, 99.0)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005300.1:60573-61262:- | gene-YFL034C-A_AKU4011 | rna-NM_001184310.1_AKU4011 | cds-NP_116619.1_AKU4011 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000182.1:8467-9156:+ | gene-YFL034C-A_BG1 | rna-NM_001184310.1_BG1 | cds-NP_116619.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005508.1:59452-60141:- | gene-YFL034C-A_Bruggeman | rna-NM_001184310.1_Bruggeman | cds-NP_116619.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005524.1:64346-65035:- | gene-YFL034C-A_CAT1 | rna-NM_001184310.1_CAT1 | cds-NP_116619.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005364.1:61382-62071:- | gene-YFL034C-A_CBS1585 | rna-NM_001184310.1_CBS1585 | cds-NP_116619.1_CBS1585 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005348.1:34887-35577:- | gene-YFL034C-A_CBS436 | rna-NM_001184310.1_CBS436 | cds-NP_116619.1_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005332.1:61118-61807:- | gene-YFL034C-A_CBS6412 | rna-NM_001184310.1_CBS6412 | cds-NP_116619.1_CBS6412 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005316.1:63650-64339:- | gene-YFL034C-A_CBS6413 | rna-NM_001184310.1_CBS6413 | cds-NP_116619.1_CBS6413 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001527.1:60573-61262:- | gene-YFL034C-A_CENPK1137D | rna-NM_001184310.1_CENPK1137D | cds-NP_116619.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005476.1:59700-60389:- | gene-YFL034C-A_EthanolRed | rna-NM_001184310.1_EthanolRed | cds-NP_116619.1_EthanolRed | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005540.1:61124-61813:- | gene-YFL034C-A_FaliES1 | rna-NM_001184310.1_FaliES1 | cds-NP_116619.1_FaliES1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000448.1:69581-70270:- | gene-YFL034C-A_JAY291 | rna-NM_001184310.1_JAY291 | cds-NP_116619.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005412.1:61551-62240:- | gene-YFL034C-A_MUCL30387 | rna-NM_001184310.1_MUCL30387 | cds-NP_116619.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005444.1:59445-60134:- | gene-YFL034C-A_MUCL30388 | rna-NM_001184310.1_MUCL30388 | cds-NP_116619.1_MUCL30388 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005284.1:59767-60456:- | gene-YFL034C-A_MUCL39482 | rna-NM_001184310.1_MUCL39482 | cds-NP_116619.1_MUCL39482 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005428.1:57467-58156:- | gene-YFL034C-A_MUCL42920 | rna-NM_001184310.1_MUCL42920 | cds-NP_116619.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011815.1:64242-64931:- | gene-YFL034C-A_NCIM3186 | rna-NM_001184310.1_NCIM3186 | cds-NP_116619.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005268.1:60840-61529:- | gene-YFL034C-A_NCYC1407 | rna-NM_001184310.1_NCYC1407 | cds-NP_116619.1_NCYC1407 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994145.1:80736-81425:- | gene-YFL034C-A_PE2H3 | rna-NM_001184310.1_PE2H3 | cds-NP_116619.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999877.1:80287-80976:- | gene-YFL034C-A_PE2H4 | rna-NM_001184310.1_PE2H4 | cds-NP_116619.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001138.5:64243-64932:- | gene-YFL034C-A_S288C | rna-NM_001184310.1_S288C | cds-NP_116619.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000004.1:270700-271389:+ | gene-YFL034C-A_SA1 | rna-NM_001184310.1_SA1 | cds-NP_116619.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005492.1:60317-61006:- | gene-YFL034C-A_ThermosaccDry | rna-NM_001184310.1_ThermosaccDry | cds-NP_116619.1_ThermosaccDry | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005460.1:68858-69547:- | gene-YFL034C-A_VR1 | rna-NM_001184310.1_VR1 | cds-NP_116619.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000012.1:45614-46303:- | gene-YFL034C-A_ZTW1 | rna-NM_001184310.1_ZTW1 | cds-NP_116619.1_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047492.1:84655-85348:- | gene-YFL034C-A_Sparadoxus | rna-NM_001184310.1_Sparadoxus | cds-NP_116619.1_Sparadoxus | 91.9 | 100.0 | Verified | 1 | 1 | 0 | False | False | False | True | False |