Gene name: RPL22A
Reference locus (S288C): YLR061W
Gene biotype: protein_coding
Description: Ribosomal 60S subunit protein L22A; required for translation of long 5' UTR of IME1 mRNA and meiotic entry; required for the oxidative stress response, pseudohyphal and invasive growth; homologous to mammalian ribosomal protein L22, no bacterial homolog; RPL22A has a paralog, RPL22B, that arose from the whole genome duplication
Top 10 interactors (score): RPL40A (0.999); RPS21B (0.999); RPS17B (0.999); RPS27A (0.999); RPS26A (0.999); RPL14B (0.999); RPL27A (0.999); RPS26B (0.999); RPL23A (0.999); RPS6A (0.999); RPL4A (0.999); RPL33A (0.999); RPS8B (0.999); RPS19A (0.999); RPL16B (0.999); RPP0 (0.999); RPL24A (0.999); RPL20B (0.999); RPL29 (0.999); RPL17A (0.999)
Homologues (species, bitscore): RPL22L1 (Homo sapiens, 122.1); Rpl22 (Mus musculus, 118.6); rpl22 (Danio rerio, 112.1); rpl22 (Xenopus tropicalis, 121.7); RpL22 (Drosophila melanogaster, 109.4); rpl-22 (Caenorhabditis elegans, 93.6); AT3G05560 (Arabidopsis thaliana, 104.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:245679-246432:+ | gene-YLR061W_AKU4011 | rna-NM_001181948.1_AKU4011 | cds-NP_013162.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000212.1:208806-209560:+ | gene-YLR061W_BG1 | rna-NM_001181948.1_BG1 | cds-NP_013162.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:255589-256343:+ | gene-YLR061W_Bruggeman | rna-NM_001181948.1_Bruggeman | cds-NP_013162.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:255895-256649:+ | gene-YLR061W_CAT1 | rna-NM_001181948.1_CAT1 | cds-NP_013162.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:252814-253567:+ | gene-YLR061W_CBS1585 | rna-NM_001181948.1_CBS1585 | cds-NP_013162.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:243429-244183:+ | gene-YLR061W_CBS436 | rna-NM_001181948.1_CBS436 | cds-NP_013162.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:251223-251976:+ | gene-YLR061W_CBS6412 | rna-NM_001181948.1_CBS6412 | cds-NP_013162.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:253077-253830:+ | gene-YLR061W_CBS6413 | rna-NM_001181948.1_CBS6413 | cds-NP_013162.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:242450-243201:+ | gene-YLR061W_CENPK1137D | rna-NM_001181948.1_CENPK1137D | cds-NP_013162.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:245191-245944:+ | gene-YLR061W_EthanolRed | rna-NM_001181948.1_EthanolRed | cds-NP_013162.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:245078-245831:+ | gene-YLR061W_FaliES1 | rna-NM_001181948.1_FaliES1 | cds-NP_013162.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000129.1:20000-20754:+ | gene-YLR061W_JAY291 | rna-NM_001181948.1_JAY291 | cds-NP_013162.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:252942-253696:+ | gene-YLR061W_MUCL30387 | rna-NM_001181948.1_MUCL30387 | cds-NP_013162.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:260597-261351:+ | gene-YLR061W_MUCL30388 | rna-NM_001181948.1_MUCL30388 | cds-NP_013162.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:253309-254062:+ | gene-YLR061W_MUCL39482 | rna-NM_001181948.1_MUCL39482 | cds-NP_013162.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:253217-253971:+ | gene-YLR061W_MUCL42920 | rna-NM_001181948.1_MUCL42920 | cds-NP_013162.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:263168-263922:+ | gene-YLR061W_NCIM3186 | rna-NM_001181948.1_NCIM3186 | cds-NP_013162.1_NCIM3186 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:245370-246123:+ | gene-YLR061W_NCYC1407 | rna-NM_001181948.1_NCYC1407 | cds-NP_013162.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:251237-251991:+ | gene-YLR061W_PE2H3 | rna-NM_001181948.1_PE2H3 | cds-NP_013162.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:250978-251732:+ | gene-YLR061W_PE2H4 | rna-NM_001181948.1_PE2H4 | cds-NP_013162.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:263194-263948:+ | gene-YLR061W_S288C | rna-NM_001181948.1_S288C | cds-NP_013162.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000046.1:89047-89804:+ | gene-YLR061W_SA1 | rna-NM_001181948.1_SA1 | cds-NP_013162.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:245263-246016:+ | gene-YLR061W_ThermosaccDry | rna-NM_001181948.1_ThermosaccDry | cds-NP_013162.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:258930-259684:+ | gene-YLR061W_VR1 | rna-NM_001181948.1_VR1 | cds-NP_013162.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000023.1:244628-245381:+ | gene-YLR061W_ZTW1 | rna-NM_001181948.1_ZTW1 | cds-NP_013162.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:253493-254256:+ | gene-YLR061W_Sparadoxus | rna-NM_001181948.1_Sparadoxus | cds-NP_013162.1_Sparadoxus | 98.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |