Gene name: RPL21B
Reference locus (S288C): YPL079W
Gene biotype: protein_coding
Description: Ribosomal 60S subunit protein L21B; homologous to mammalian ribosomal protein L21, no bacterial homolog; RPL21B has a paralog, RPL21A, that arose from the whole genome duplication
Top 10 interactors (score): RPL17A (0.999); RPS26A (0.999); RPL40A (0.999); RPL20B (0.999); RPL29 (0.999); RPL32 (0.999); RPL39 (0.999); RPL18B (0.999); RPL34A (0.999); RPL19B (0.999); RPL42A (0.999); RPS13 (0.999); RPS25B (0.999); RPL2A (0.999); RPS22A (0.999); RPL14B (0.999); RPS6A (0.999); RPL3 (0.999); RPL11B (0.999); RPS29B (0.999)
Homologues (species, bitscore): RPL21 (Homo sapiens, 199.1); Rpl21 (Mus musculus, 199.5); rpl21 (Danio rerio, 202.6); rpl21 (Xenopus tropicalis, 204.5); RpL21 (Drosophila melanogaster, 180.3); rpl-21 (Caenorhabditis elegans, 179.1); AT1G57660 (Arabidopsis thaliana, 171.0)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:384359-385264:+ | gene-YPL079W_AKU4011 | rna-NM_001183893.1_AKU4011 | cds-NP_015246.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000069.1:590038-590941:+ | gene-YPL079W_BG1 | rna-NM_001183893.1_BG1 | cds-NP_015246.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:460682-461588:+ | gene-YPL079W_Bruggeman | rna-NM_001183893.1_Bruggeman | cds-NP_015246.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:501046-501949:+ | gene-YPL079W_CAT1 | rna-NM_001183893.1_CAT1 | cds-NP_015246.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:388430-389335:+ | gene-YPL079W_CBS1585 | rna-NM_001183893.1_CBS1585 | cds-NP_015246.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:402989-403892:+ | gene-YPL079W_CBS436 | rna-NM_001183893.1_CBS436 | cds-NP_015246.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:392621-393526:+ | gene-YPL079W_CBS6412 | rna-NM_001183893.1_CBS6412 | cds-NP_015246.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:384982-385887:+ | gene-YPL079W_CBS6413 | rna-NM_001183893.1_CBS6413 | cds-NP_015246.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:406605-407508:+ | gene-YPL079W_CENPK1137D | rna-NM_001183893.1_CENPK1137D | cds-NP_015246.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:382727-383631:+ | gene-YPL079W_EthanolRed | rna-NM_001183893.1_EthanolRed | cds-NP_015246.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:390557-391461:+ | gene-YPL079W_FaliES1 | rna-NM_001183893.1_FaliES1 | cds-NP_015246.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000350.1:1-672:- | gene-YPL079W_JAY291 | rna-NM_001183893.1_JAY291 | cds-NP_015246.1_JAY291 | 52.1 | 52.1 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:401513-402419:+ | gene-YPL079W_MUCL30387 | rna-NM_001183893.1_MUCL30387 | cds-NP_015246.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:400314-401218:+ | gene-YPL079W_MUCL30388 | rna-NM_001183893.1_MUCL30388 | cds-NP_015246.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:381759-382664:+ | gene-YPL079W_MUCL39482 | rna-NM_001183893.1_MUCL39482 | cds-NP_015246.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:439620-440526:+ | gene-YPL079W_MUCL42920 | rna-NM_001183893.1_MUCL42920 | cds-NP_015246.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:406619-407522:+ | gene-YPL079W_NCIM3186 | rna-NM_001183893.1_NCIM3186 | cds-NP_015246.1_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:388368-389273:+ | gene-YPL079W_NCYC1407 | rna-NM_001183893.1_NCYC1407 | cds-NP_015246.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:395649-396552:+ | gene-YPL079W_PE2H3 | rna-NM_001183893.1_PE2H3 | cds-NP_015246.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:395272-396175:+ | gene-YPL079W_PE2H4 | rna-NM_001183893.1_PE2H4 | cds-NP_015246.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:406636-407539:+ | gene-YPL079W_S288C | rna-NM_001183893.1_S288C | cds-NP_015246.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000057.1:28747-29650:+ | gene-YPL079W_SA1 | rna-NM_001183893.1_SA1 | cds-NP_015246.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:390357-391261:+ | gene-YPL079W_ThermosaccDry | rna-NM_001183893.1_ThermosaccDry | cds-NP_015246.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:405358-406261:+ | gene-YPL079W_VR1 | rna-NM_001183893.1_VR1 | cds-NP_015246.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:389666-390571:+ | gene-YPL079W_ZTW1 | rna-NM_001183893.1_ZTW1 | cds-NP_015246.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:391336-392240:+ | gene-YPL079W_Sparadoxus | rna-NM_001183893.1_Sparadoxus | cds-NP_015246.1_Sparadoxus | 98.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |