Gene name: RPL20B
Reference locus (S288C): YOR312C
Gene biotype: protein_coding
Description: Ribosomal 60S subunit protein L20B; homologous to mammalian ribosomal protein L18A, no bacterial homolog; RPL20B has a paralog, RPL20A, that arose from the whole genome duplication
Top 10 interactors (score): RPL15A (0.999); RPL36B (0.999); RPS18A (0.999); RPL16A (0.999); RPP1A (0.999); RPL6A (0.999); RPS11B (0.999); RPS15 (0.999); RPL2B (0.999); RPL6B (0.999); RPS3 (0.999); RPS2 (0.999); RPL35A (0.999); RPL40B (0.999); RPL9B (0.999); RPS16A (0.999); RPL31A (0.999); RPL1A (0.999); RPL13A (0.999); RPL12A (0.999)
Homologues (species, bitscore): RPL18A (Homo sapiens, 198.4); Rpl18a (Mus musculus, 198.0); rpl18a (Danio rerio, 192.2); rpl18a (Xenopus tropicalis, 202.2); RpL18A (Drosophila melanogaster, 193.7); rpl-20 (Caenorhabditis elegans, 180.6); AT2G34480 (Arabidopsis thaliana, 176.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:890734-891678:- | gene-YOR312C_AKU4011 | rna-NM_001183732.1_AKU4011 | cds-NP_014957.2_AKU4011 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000123.1:292741-293685:- | gene-YOR312C_BG1 | rna-NM_001183732.1_BG1 | cds-NP_014957.2_BG1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:876149-877093:- | gene-YOR312C_Bruggeman | rna-NM_001183732.1_Bruggeman | cds-NP_014957.2_Bruggeman | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:876859-877803:- | gene-YOR312C_CAT1 | rna-NM_001183732.1_CAT1 | cds-NP_014957.2_CAT1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:874554-875498:- | gene-YOR312C_CBS1585 | rna-NM_001183732.1_CBS1585 | cds-NP_014957.2_CBS1585 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:872382-873326:- | gene-YOR312C_CBS436 | rna-NM_001183732.1_CBS436 | cds-NP_014957.2_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005341.1:870262-871206:- | gene-YOR312C_CBS6412 | rna-NM_001183732.1_CBS6412 | cds-NP_014957.2_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:879390-880334:- | gene-YOR312C_CBS6413 | rna-NM_001183732.1_CBS6413 | cds-NP_014957.2_CBS6413 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:900026-900970:- | gene-YOR312C_CENPK1137D | rna-NM_001183732.1_CENPK1137D | cds-NP_014957.2_CENPK1137D | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005485.1:866652-867596:- | gene-YOR312C_EthanolRed | rna-NM_001183732.1_EthanolRed | cds-NP_014957.2_EthanolRed | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:872275-873219:- | gene-YOR312C_FaliES1 | rna-NM_001183732.1_FaliES1 | cds-NP_014957.2_FaliES1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000078.1:130051-130995:+ | gene-YOR312C_JAY291 | rna-NM_001183732.1_JAY291 | cds-NP_014957.2_JAY291 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:880388-881332:- | gene-YOR312C_MUCL30387 | rna-NM_001183732.1_MUCL30387 | cds-NP_014957.2_MUCL30387 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:888396-889340:- | gene-YOR312C_MUCL30388 | rna-NM_001183732.1_MUCL30388 | cds-NP_014957.2_MUCL30388 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:881099-882043:- | gene-YOR312C_MUCL39482 | rna-NM_001183732.1_MUCL39482 | cds-NP_014957.2_MUCL39482 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:890568-891512:- | gene-YOR312C_MUCL42920 | rna-NM_001183732.1_MUCL42920 | cds-NP_014957.2_MUCL42920 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:900139-901083:- | gene-YOR312C_NCIM3186 | rna-NM_001183732.1_NCIM3186 | cds-NP_014957.2_NCIM3186 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:882100-883044:- | gene-YOR312C_NCYC1407 | rna-NM_001183732.1_NCYC1407 | cds-NP_014957.2_NCYC1407 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:880321-881265:- | gene-YOR312C_PE2H3 | rna-NM_001183732.1_PE2H3 | cds-NP_014957.2_PE2H3 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:896673-897617:- | gene-YOR312C_PE2H4 | rna-NM_001183732.1_PE2H4 | cds-NP_014957.2_PE2H4 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:900250-901194:- | gene-YOR312C_S288C | rna-NM_001183732.1_S288C | cds-NP_014957.2_S288C | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000016.1:10572-11516:- | gene-YOR312C_SA1 | rna-NM_001183732.1_SA1 | cds-NP_014957.2_SA1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:871458-872402:- | gene-YOR312C_ThermosaccDry | rna-NM_001183732.1_ThermosaccDry | cds-NP_014957.2_ThermosaccDry | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:934743-935687:- | gene-YOR312C_VR1 | rna-NM_001183732.1_VR1 | cds-NP_014957.2_VR1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000032.1:604328-605272:- | gene-YOR312C_ZTW1 | rna-NM_001183732.1_ZTW1 | cds-NP_014957.2_ZTW1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:878534-879493:- | gene-YOR312C_Sparadoxus | rna-NM_001183732.1_Sparadoxus | cds-NP_014957.2_Sparadoxus | 97.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |