Gene name: RPL20A
Reference locus (S288C): YMR242C
Gene biotype: protein_coding
Description: Ribosomal 60S subunit protein L20A; homologous to mammalian ribosomal protein L18A, no bacterial homolog; RPL20A has a paralog, RPL20B, that arose from the whole genome duplication
Top 10 interactors (score): RPL21A (0.999); RPS25A (0.999); RPS28B (0.999); RPL42B (0.999); RPL7A (0.999); RPL10 (0.999); RPS31 (0.999); ASC1 (0.999); RPL35B (0.999); RPL8A (0.999); RPS17A (0.999); RPS23B (0.999); RPS30B (0.999); RPS20 (0.999); RPL11A (0.999); RPS21A (0.999); RPL25 (0.999); RPL22A (0.999); RPS1B (0.999); ARX1 (0.999)
Homologues (species, bitscore): RPL18A (Homo sapiens, 198.4); Rpl18a (Mus musculus, 198.0); rpl18a (Danio rerio, 192.2); rpl18a (Xenopus tropicalis, 202.2); RpL18A (Drosophila melanogaster, 193.7); rpl-20 (Caenorhabditis elegans, 180.6); AT2G34480 (Arabidopsis thaliana, 176.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:793130-794125:- | gene-YMR242C_AKU4011 | rna-NM_001182749.1_AKU4011 | cds-NP_013969.3_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000069.1:160467-161462:+ | gene-YMR242C_BG1 | rna-NM_001182749.1_BG1 | cds-NP_013969.3_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:737355-738350:- | gene-YMR242C_Bruggeman | rna-NM_001182749.1_Bruggeman | cds-NP_013969.3_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:741249-742244:- | gene-YMR242C_CAT1 | rna-NM_001182749.1_CAT1 | cds-NP_013969.3_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:725389-726384:- | gene-YMR242C_CBS1585 | rna-NM_001182749.1_CBS1585 | cds-NP_013969.3_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:729657-730652:- | gene-YMR242C_CBS436 | rna-NM_001182749.1_CBS436 | cds-NP_013969.3_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:836950-837945:- | gene-YMR242C_CBS6412 | rna-NM_001182749.1_CBS6412 | cds-NP_013969.3_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:724541-725536:- | gene-YMR242C_CBS6413 | rna-NM_001182749.1_CBS6413 | cds-NP_013969.3_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:747968-748963:- | gene-YMR242C_CENPK1137D | rna-NM_001182749.1_CENPK1137D | cds-NP_013969.3_CENPK1137D | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:785790-786785:- | gene-YMR242C_EthanolRed | rna-NM_001182749.1_EthanolRed | cds-NP_013969.3_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:731814-732809:- | gene-YMR242C_FaliES1 | rna-NM_001182749.1_FaliES1 | cds-NP_013969.3_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000141.1:53776-54771:+ | gene-YMR242C_JAY291 | rna-NM_001182749.1_JAY291 | cds-NP_013969.3_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:731139-732134:- | gene-YMR242C_MUCL30387 | rna-NM_001182749.1_MUCL30387 | cds-NP_013969.3_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:738366-739361:- | gene-YMR242C_MUCL30388 | rna-NM_001182749.1_MUCL30388 | cds-NP_013969.3_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:726459-727454:- | gene-YMR242C_MUCL39482 | rna-NM_001182749.1_MUCL39482 | cds-NP_013969.3_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:733802-734797:- | gene-YMR242C_MUCL42920 | rna-NM_001182749.1_MUCL42920 | cds-NP_013969.3_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:753179-754174:- | gene-YMR242C_NCIM3186 | rna-NM_001182749.1_NCIM3186 | cds-NP_013969.3_NCIM3186 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:726115-727110:- | gene-YMR242C_NCYC1407 | rna-NM_001182749.1_NCYC1407 | cds-NP_013969.3_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:735996-736991:- | gene-YMR242C_PE2H3 | rna-NM_001182749.1_PE2H3 | cds-NP_013969.3_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:737013-738008:- | gene-YMR242C_PE2H4 | rna-NM_001182749.1_PE2H4 | cds-NP_013969.3_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:753225-754220:- | gene-YMR242C_S288C | rna-NM_001182749.1_S288C | cds-NP_013969.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000002.1:53894-54889:+ | gene-YMR242C_SA1 | rna-NM_001182749.1_SA1 | cds-NP_013969.3_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:727985-728980:- | gene-YMR242C_ThermosaccDry | rna-NM_001182749.1_ThermosaccDry | cds-NP_013969.3_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:740531-741526:- | gene-YMR242C_VR1 | rna-NM_001182749.1_VR1 | cds-NP_013969.3_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000028.1:143121-144116:- | gene-YMR242C_ZTW1 | rna-NM_001182749.1_ZTW1 | cds-NP_013969.3_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:745792-746803:- | gene-YMR242C_Sparadoxus | rna-NM_001182749.1_Sparadoxus | cds-NP_013969.3_Sparadoxus | 97.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |