Gene name: RPL1B
Reference locus (S288C): YGL135W
Gene biotype: protein_coding
Description: Ribosomal 60S subunit protein L1B; N-terminally acetylated; homologous to mammalian ribosomal protein L10A and bacterial L1; RPL1B has a paralog, RPL1A, that arose from the whole genome duplication; rpl1a rpl1b double null mutation is lethal
Top 10 interactors (score): RPL15A (0.999); RPL27B (0.999); RPL13A (0.999); RPS14B (0.999); RPL6A (0.999); RPL37B (0.999); RPL12A (0.999); RPS4A (0.999); RPL21B (0.999); RPS23A (0.999); RPL4B (0.999); RPS4B (0.999); RPL30 (0.999); RPS12 (0.999); RPL19A (0.999); RPS10A (0.999); RPS11A (0.999); RPS16B (0.999); RPL13B (0.999); RPS8A (0.999)
Homologues (species, bitscore): RPL10A (Homo sapiens, 271.6); Rpl10a (Mus musculus, 271.6); rpl10a (Danio rerio, 268.9); rpl10a (Xenopus tropicalis, 267.3); RpL10Ab (Drosophila melanogaster, 273.1); rpl-1 (Caenorhabditis elegans, 273.9); AT5G22440 (Arabidopsis thaliana, 287.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:113517-114140:+ | gene-YGL135W_AKU4011 | rna-NM_001181000.3_AKU4011 | cds-NP_011380.3_AKU4011 | 90.5 | 95.2 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000132.1:147070-147723:- | gene-YGL135W_BG1 | rna-NM_001181000.3_BG1 | cds-NP_011380.3_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:259908-260558:+ | gene-YGL135W_Bruggeman | rna-NM_001181000.3_Bruggeman | cds-NP_011380.3_Bruggeman | 98.0 | 99.5 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:255496-256146:+ | gene-YGL135W_CAT1 | rna-NM_001181000.3_CAT1 | cds-NP_011380.3_CAT1 | 97.8 | 99.5 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:260588-261220:+ | gene-YGL135W_CBS1585 | rna-NM_001181000.3_CBS1585 | cds-NP_011380.3_CBS1585 | 82.8 | 90.9 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:255448-256098:+ | gene-YGL135W_CBS436 | rna-NM_001181000.3_CBS436 | cds-NP_011380.3_CBS436 | 97.8 | 99.5 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | MBVQ01000067.1:1-554:+ | gene-YGL135W_CBS6412 | rna-NM_001181000.3_CBS6412 | cds-NP_011380.3_CBS6412 | 84.5 | 84.7 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:255396-256039:+ | gene-YGL135W_CBS6413 | rna-NM_001181000.3_CBS6413 | cds-NP_011380.3_CBS6413 | 90.1 | 97.0 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:254900-255553:+ | gene-YGL135W_CENPK1137D | rna-NM_001181000.3_CENPK1137D | cds-NP_011380.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:112805-113425:+ | gene-YGL135W_EthanolRed | rna-NM_001181000.3_EthanolRed | cds-NP_011380.3_EthanolRed | 94.4 | 94.9 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:119976-120631:+ | gene-YGL135W_FaliES1 | rna-NM_001181000.3_FaliES1 | cds-NP_011380.3_FaliES1 | 93.8 | 98.1 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:256878-257528:+ | gene-YGL135W_MUCL30387 | rna-NM_001181000.3_MUCL30387 | cds-NP_011380.3_MUCL30387 | 98.0 | 99.5 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:259996-260646:+ | gene-YGL135W_MUCL30388 | rna-NM_001181000.3_MUCL30388 | cds-NP_011380.3_MUCL30388 | 98.0 | 99.5 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:257621-258264:+ | gene-YGL135W_MUCL39482 | rna-NM_001181000.3_MUCL39482 | cds-NP_011380.3_MUCL39482 | 90.1 | 97.0 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:260870-261520:+ | gene-YGL135W_MUCL42920 | rna-NM_001181000.3_MUCL42920 | cds-NP_011380.3_MUCL42920 | 98.0 | 99.5 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:254641-255294:+ | gene-YGL135W_NCIM3186 | rna-NM_001181000.3_NCIM3186 | cds-NP_011380.3_NCIM3186 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:249112-249755:+ | gene-YGL135W_NCYC1407 | rna-NM_001181000.3_NCYC1407 | cds-NP_011380.3_NCYC1407 | 90.1 | 97.0 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:250747-251400:+ | gene-YGL135W_PE2H3 | rna-NM_001181000.3_PE2H3 | cds-NP_011380.3_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:255745-256398:+ | gene-YGL135W_PE2H4 | rna-NM_001181000.3_PE2H4 | cds-NP_011380.3_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:254641-255294:+ | gene-YGL135W_S288C | rna-NM_001181000.3_S288C | cds-NP_011380.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000095.1:37729-37907:- | gene-YGL135W_SA1 | rna-NM_001181000.3_SA1 | cds-NP_011380.3_SA1 | 27.2 | 27.3 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:249106-249749:+ | gene-YGL135W_ThermosaccDry | rna-NM_001181000.3_ThermosaccDry | cds-NP_011380.3_ThermosaccDry | 90.1 | 97.0 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000014.1:246930-247583:+ | gene-YGL135W_ZTW1 | rna-NM_001181000.3_ZTW1 | cds-NP_011380.3_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:252953-253606:+ | gene-YGL135W_Sparadoxus | rna-NM_001181000.3_Sparadoxus | cds-NP_011380.3_Sparadoxus | 98.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |