Gene name: RPL1A
Reference locus (S288C): YPL220W
Gene biotype: protein_coding
Description: Ribosomal 60S subunit protein L1A; N-terminally acetylated; homologous to mammalian ribosomal protein L10A and bacterial L1; RPL1A has a paralog, RPL1B, that arose from the whole genome duplication; rpl1a rpl1b double null mutation is lethal
Top 10 interactors (score): RPL22A (0.999); RPL25 (0.999); RPS20 (0.999); RPS21A (0.999); RPL11A (0.999); RPS17A (0.999); RPS23B (0.999); RPL8A (0.999); RPS1B (0.999); RPL43A (0.999); RPS29A (0.999); RPS1A (0.999); RPL7A (0.999); RPS28B (0.999); RPL42B (0.999); RPS25A (0.999); RPL21A (0.999); RPS0A (0.999); RPL24B (0.999); RPL18A (0.999)
Homologues (species, bitscore): RPL10A (Homo sapiens, 271.6); Rpl10a (Mus musculus, 271.6); rpl10a (Danio rerio, 268.9); rpl10a (Xenopus tropicalis, 267.3); RpL10Ab (Drosophila melanogaster, 273.1); rpl-1 (Caenorhabditis elegans, 273.9); AT5G22440 (Arabidopsis thaliana, 287.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:257206-257858:+ | gene-YPL220W_AKU4011 | rna-NM_001184034.1_AKU4011 | cds-NP_015104.1_AKU4011 | 87.6 | 99.8 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000069.1:319440-320093:+ | gene-YPL220W_BG1 | rna-NM_001184034.1_BG1 | cds-NP_015104.1_BG1 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:138766-139418:+ | gene-YPL220W_Bruggeman | rna-NM_001184034.1_Bruggeman | cds-NP_015104.1_Bruggeman | 75.2 | 99.8 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:135749-136401:+ | gene-YPL220W_CAT1 | rna-NM_001184034.1_CAT1 | cds-NP_015104.1_CAT1 | 75.2 | 99.8 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:117869-118521:+ | gene-YPL220W_CBS1585 | rna-NM_001184034.1_CBS1585 | cds-NP_015104.1_CBS1585 | 88.0 | 99.8 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:132280-132932:+ | gene-YPL220W_CBS436 | rna-NM_001184034.1_CBS436 | cds-NP_015104.1_CBS436 | 75.2 | 99.8 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:246571-247075:+ | gene-YPL220W_CBS6412 | rna-NM_001184034.1_CBS6412 | cds-NP_015104.1_CBS6412 | 69.2 | 76.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:114044-114696:+ | gene-YPL220W_CBS6413 | rna-NM_001184034.1_CBS6413 | cds-NP_015104.1_CBS6413 | 88.0 | 99.8 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:135715-136380:+ | gene-YPL220W_CENPK1137D | rna-NM_001184034.1_CENPK1137D | cds-NP_015104.1_CENPK1137D | 98.0 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:247157-247820:+ | gene-YPL220W_EthanolRed | rna-NM_001184034.1_EthanolRed | cds-NP_015104.1_EthanolRed | 94.9 | 99.3 | Unannotated | 1 | 1 | 0 | False | False | True | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:249126-249776:+ | gene-YPL220W_FaliES1 | rna-NM_001184034.1_FaliES1 | cds-NP_015104.1_FaliES1 | 95.2 | 99.2 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000069.1:37698-38351:- | gene-YPL220W_JAY291 | rna-NM_001184034.1_JAY291 | cds-NP_015104.1_JAY291 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:130600-131252:+ | gene-YPL220W_MUCL30387 | rna-NM_001184034.1_MUCL30387 | cds-NP_015104.1_MUCL30387 | 75.2 | 99.8 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:129039-129691:+ | gene-YPL220W_MUCL30388 | rna-NM_001184034.1_MUCL30388 | cds-NP_015104.1_MUCL30388 | 75.2 | 99.8 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:110999-111651:+ | gene-YPL220W_MUCL39482 | rna-NM_001184034.1_MUCL39482 | cds-NP_015104.1_MUCL39482 | 88.0 | 99.8 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:129875-130527:+ | gene-YPL220W_MUCL42920 | rna-NM_001184034.1_MUCL42920 | cds-NP_015104.1_MUCL42920 | 75.2 | 99.8 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:135773-136426:+ | gene-YPL220W_NCIM3186 | rna-NM_001184034.1_NCIM3186 | cds-NP_015104.1_NCIM3186 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:117445-118097:+ | gene-YPL220W_NCYC1407 | rna-NM_001184034.1_NCYC1407 | cds-NP_015104.1_NCYC1407 | 88.0 | 99.8 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:125123-125776:+ | gene-YPL220W_PE2H3 | rna-NM_001184034.1_PE2H3 | cds-NP_015104.1_PE2H3 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:124766-125419:+ | gene-YPL220W_PE2H4 | rna-NM_001184034.1_PE2H4 | cds-NP_015104.1_PE2H4 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:135790-136443:+ | gene-YPL220W_S288C | rna-NM_001184034.1_S288C | cds-NP_015104.1_S288C | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000064.1:1-179:+ | gene-YPL220W_SA1 | rna-NM_001184034.1_SA1 | cds-NP_015104.1_SA1 | 27.3 | 27.3 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:119760-120412:+ | gene-YPL220W_ThermosaccDry | rna-NM_001184034.1_ThermosaccDry | cds-NP_015104.1_ThermosaccDry | 88.0 | 99.8 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:359528-360132:+ | gene-YPL220W_VR1 | rna-NM_001184034.1_VR1 | cds-NP_015104.1_VR1 | 89.8 | 91.5 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:119301-119954:+ | gene-YPL220W_ZTW1 | rna-NM_001184034.1_ZTW1 | cds-NP_015104.1_ZTW1 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:120878-121531:+ | gene-YPL220W_Sparadoxus | rna-NM_001184034.1_Sparadoxus | cds-NP_015104.1_Sparadoxus | 97.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |