Gene name: RPL19B
Reference locus (S288C): YBL027W
Gene biotype: protein_coding
Description: Ribosomal 60S subunit protein L19B; rpl19a and rpl19b single null mutations result in slow growth, while the double null mutation is lethal; homologous to mammalian ribosomal protein L19, no bacterial homolog; RPL19B has a paralog, RPL19A, that arose from the whole genome duplication
Top 10 interactors (score): RPS27A (0.999); RPL23A (0.999); RPS26A (0.999); RPL17A (0.999); RPS17B (0.999); RPL40A (0.999); RLP7 (0.999); RPS21B (0.999); RPL35B (0.999); RPL17B (0.999); RPS30A (0.999); RPL20B (0.999); RPL29 (0.999); RPS28B (0.999); RPS7B (0.999); RPS25A (0.999); RPL42B (0.999); RPL7A (0.999); RPS31 (0.999); RPL10 (0.999)
Homologues (species, bitscore): RPL19 (Homo sapiens, 223.8); Rpl19 (Mus musculus, 223.8); rpl19 (Danio rerio, 226.5); rpl19 (Xenopus tropicalis, 219.9); RpL19 (Drosophila melanogaster, 224.6); rpl-19 (Caenorhabditis elegans, 216.5); AT3G16780 (Arabidopsis thaliana, 224.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:162036-162989:+ | gene-YBL027W_AKU4011 | rna-NM_001178267.1_AKU4011 | cds-NP_009526.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000179.1:152869-153822:+ | gene-YBL027W_BG1 | rna-NM_001178267.1_BG1 | cds-NP_009526.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005504.1:162627-163580:+ | gene-YBL027W_Bruggeman | rna-NM_001178267.1_Bruggeman | cds-NP_009526.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005520.1:165240-166193:+ | gene-YBL027W_CAT1 | rna-NM_001178267.1_CAT1 | cds-NP_009526.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:154591-155544:+ | gene-YBL027W_CBS1585 | rna-NM_001178267.1_CBS1585 | cds-NP_009526.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:163047-164000:+ | gene-YBL027W_CBS436 | rna-NM_001178267.1_CBS436 | cds-NP_009526.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:253370-254323:+ | gene-YBL027W_CBS6412 | rna-NM_001178267.1_CBS6412 | cds-NP_009526.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:160161-161114:+ | gene-YBL027W_CBS6413 | rna-NM_001178267.1_CBS6413 | cds-NP_009526.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:162189-163142:+ | gene-YBL027W_CENPK1137D | rna-NM_001178267.1_CENPK1137D | cds-NP_009526.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:289577-290530:+ | gene-YBL027W_EthanolRed | rna-NM_001178267.1_EthanolRed | cds-NP_009526.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:176843-177796:+ | gene-YBL027W_FaliES1 | rna-NM_001178267.1_FaliES1 | cds-NP_009526.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000421.1:2521-3474:+ | gene-YBL027W_JAY291 | rna-NM_001178267.1_JAY291 | cds-NP_009526.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:162236-163189:+ | gene-YBL027W_MUCL30387 | rna-NM_001178267.1_MUCL30387 | cds-NP_009526.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:163278-164480:+ | gene-YBL027W_MUCL30388 | rna-NM_001178267.1_MUCL30388 | cds-NP_009526.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:154776-155729:+ | gene-YBL027W_MUCL39482 | rna-NM_001178267.1_MUCL39482 | cds-NP_009526.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:161559-162761:+ | gene-YBL027W_MUCL42920 | rna-NM_001178267.1_MUCL42920 | cds-NP_009526.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:168220-169173:+ | gene-YBL027W_NCIM3186 | rna-NM_001178267.1_NCIM3186 | cds-NP_009526.1_NCIM3186 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:155925-156878:+ | gene-YBL027W_NCYC1407 | rna-NM_001178267.1_NCYC1407 | cds-NP_009526.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:162157-163110:+ | gene-YBL027W_PE2H3 | rna-NM_001178267.1_PE2H3 | cds-NP_009526.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:159801-160754:+ | gene-YBL027W_PE2H4 | rna-NM_001178267.1_PE2H4 | cds-NP_009526.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:168423-169376:+ | gene-YBL027W_S288C | rna-NM_001178267.1_S288C | cds-NP_009526.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000051.1:53090-54043:+ | gene-YBL027W_SA1 | rna-NM_001178267.1_SA1 | cds-NP_009526.1_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:176798-177751:+ | gene-YBL027W_ThermosaccDry | rna-NM_001178267.1_ThermosaccDry | cds-NP_009526.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:158968-159921:+ | gene-YBL027W_VR1 | rna-NM_001178267.1_VR1 | cds-NP_009526.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:153521-154474:+ | gene-YBL027W_ZTW1 | rna-NM_001178267.1_ZTW1 | cds-NP_009526.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:188473-189436:+ | gene-YBL027W_Sparadoxus | rna-NM_001178267.1_Sparadoxus | cds-NP_009526.1_Sparadoxus | 98.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |