Gene name: RPL19A
Reference locus (S288C): YBR084C-A
Gene biotype: protein_coding
Description: Ribosomal 60S subunit protein L19A; rpl19a and rpl19b single null mutations result in slow growth, while the double null mutation is lethal; homologous to mammalian ribosomal protein L19, no bacterial homolog; RPL19A has a paralog, RPL19B, that arose from the whole genome duplication
Top 10 interactors (score): RPS18B (0.999); RPS4A (0.999); RPS24A (0.999); RPS24B (0.999); RPL5 (0.999); RPL1B (0.999); RPL43B (0.999); RPL21B (0.999); RPL23B (0.999); RPS23A (0.999); RPL36A (0.999); RPL34B (0.999); RPS6B (0.999); RPL37A (0.999); RPL7B (0.999); RPS0B (0.999); RPL26B (0.999); RPL4B (0.999); RPL31B (0.999); RPL38 (0.999)
Homologues (species, bitscore): RPL19 (Homo sapiens, 223.8); Rpl19 (Mus musculus, 223.8); rpl19 (Danio rerio, 226.5); rpl19 (Xenopus tropicalis, 219.9); RpL19 (Drosophila melanogaster, 224.6); rpl-19 (Caenorhabditis elegans, 216.5); AT3G16780 (Arabidopsis thaliana, 224.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:396560-397635:- | gene-YBR084C-A_AKU4011 | rna-NM_001180057.1_AKU4011 | cds-NP_009641.1_AKU4011 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000179.1:387546-388621:- | gene-YBR084C-A_BG1 | rna-NM_001180057.1_BG1 | cds-NP_009641.1_BG1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005504.1:398136-399211:- | gene-YBR084C-A_Bruggeman | rna-NM_001180057.1_Bruggeman | cds-NP_009641.1_Bruggeman | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005520.1:401114-402189:- | gene-YBR084C-A_CAT1 | rna-NM_001180057.1_CAT1 | cds-NP_009641.1_CAT1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:388845-389920:- | gene-YBR084C-A_CBS1585 | rna-NM_001180057.1_CBS1585 | cds-NP_009641.1_CBS1585 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:396951-398027:- | gene-YBR084C-A_CBS436 | rna-NM_001180057.1_CBS436 | cds-NP_009641.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:487075-488150:- | gene-YBR084C-A_CBS6412 | rna-NM_001180057.1_CBS6412 | cds-NP_009641.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:393985-395060:- | gene-YBR084C-A_CBS6413 | rna-NM_001180057.1_CBS6413 | cds-NP_009641.1_CBS6413 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:407945-409020:- | gene-YBR084C-A_CENPK1137D | rna-NM_001180057.1_CENPK1137D | cds-NP_009641.1_CENPK1137D | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:523352-524427:- | gene-YBR084C-A_EthanolRed | rna-NM_001180057.1_EthanolRed | cds-NP_009641.1_EthanolRed | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:412635-413710:- | gene-YBR084C-A_FaliES1 | rna-NM_001180057.1_FaliES1 | cds-NP_009641.1_FaliES1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000013.1:13487-14566:+ | gene-YBR084C-A_JAY291 | rna-NM_001180057.1_JAY291 | cds-NP_009641.1_JAY291 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:399433-400509:- | gene-YBR084C-A_MUCL30387 | rna-NM_001180057.1_MUCL30387 | cds-NP_009641.1_MUCL30387 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:399366-400441:- | gene-YBR084C-A_MUCL30388 | rna-NM_001180057.1_MUCL30388 | cds-NP_009641.1_MUCL30388 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:388836-389911:- | gene-YBR084C-A_MUCL39482 | rna-NM_001180057.1_MUCL39482 | cds-NP_009641.1_MUCL39482 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:396048-397123:- | gene-YBR084C-A_MUCL42920 | rna-NM_001180057.1_MUCL42920 | cds-NP_009641.1_MUCL42920 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:413983-415058:- | gene-YBR084C-A_NCIM3186 | rna-NM_001180057.1_NCIM3186 | cds-NP_009641.1_NCIM3186 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:389768-390843:- | gene-YBR084C-A_NCYC1407 | rna-NM_001180057.1_NCYC1407 | cds-NP_009641.1_NCYC1407 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:402346-403423:- | gene-YBR084C-A_PE2H3 | rna-NM_001180057.1_PE2H3 | cds-NP_009641.1_PE2H3 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:400022-401099:- | gene-YBR084C-A_PE2H4 | rna-NM_001180057.1_PE2H4 | cds-NP_009641.1_PE2H4 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:414186-415261:- | gene-YBR084C-A_S288C | rna-NM_001180057.1_S288C | cds-NP_009641.1_S288C | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000017.1:62254-63329:+ | gene-YBR084C-A_SA1 | rna-NM_001180057.1_SA1 | cds-NP_009641.1_SA1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:411642-412717:- | gene-YBR084C-A_ThermosaccDry | rna-NM_001180057.1_ThermosaccDry | cds-NP_009641.1_ThermosaccDry | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:393627-394704:- | gene-YBR084C-A_VR1 | rna-NM_001180057.1_VR1 | cds-NP_009641.1_VR1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:387310-388385:- | gene-YBR084C-A_ZTW1 | rna-NM_001180057.1_ZTW1 | cds-NP_009641.1_ZTW1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:424284-425358:- | gene-YBR084C-A_Sparadoxus | rna-NM_001180057.1_Sparadoxus | cds-NP_009641.1_Sparadoxus | 98.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |