Gene name: RPL18B
Reference locus (S288C): YNL301C
Gene biotype: protein_coding
Description: Ribosomal 60S subunit protein L18B; homologous to mammalian ribosomal protein L18, no bacterial homolog; RPL18B has a paralog, RPL18A, that arose from the whole genome duplication
Top 10 interactors (score): RPL32 (0.999); RPL33A (0.999); RPS26B (0.999); RPS6A (0.999); RPL4A (0.999); RPL27A (0.999); RPL14B (0.999); RPL3 (0.999); RPS29B (0.999); RPL11B (0.999); RPP2A (0.999); RPL39 (0.999); RPL34A (0.999); RPL19B (0.999); RPL42A (0.999); RPS22B (0.999); RPL2A (0.999); RPS22A (0.999); RPS13 (0.999); RPS25B (0.999)
Homologues (species, bitscore): RPL18 (Homo sapiens, 203.4); Rpl18 (Mus musculus, 208.0); rpl18 (Danio rerio, 198.0); rpl18 (Xenopus tropicalis, 184.5); RpL18 (Drosophila melanogaster, 207.6); rpl-18 (Caenorhabditis elegans, 212.2); AT5G27850 (Arabidopsis thaliana, 217.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005308.1:57381-58372:- | gene-YNL301C_AKU4011 | rna-NM_001183139.1_AKU4011 | cds-NP_014098.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000074.1:32271-33263:+ | gene-YNL301C_BG1 | rna-NM_001183139.1_BG1 | cds-NP_014098.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005516.1:66717-67709:- | gene-YNL301C_Bruggeman | rna-NM_001183139.1_Bruggeman | cds-NP_014098.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005532.1:69332-70324:- | gene-YNL301C_CAT1 | rna-NM_001183139.1_CAT1 | cds-NP_014098.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005372.1:57712-58703:- | gene-YNL301C_CBS1585 | rna-NM_001183139.1_CBS1585 | cds-NP_014098.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005356.1:58201-59193:- | gene-YNL301C_CBS436 | rna-NM_001183139.1_CBS436 | cds-NP_014098.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005340.1:54372-55363:- | gene-YNL301C_CBS6412 | rna-NM_001183139.1_CBS6412 | cds-NP_014098.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005324.1:54561-55552:- | gene-YNL301C_CBS6413 | rna-NM_001183139.1_CBS6413 | cds-NP_014098.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001535.1:57403-58395:- | gene-YNL301C_CENPK1137D | rna-NM_001183139.1_CENPK1137D | cds-NP_014098.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005484.1:54403-55394:- | gene-YNL301C_EthanolRed | rna-NM_001183139.1_EthanolRed | cds-NP_014098.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005548.1:55302-56293:- | gene-YNL301C_FaliES1 | rna-NM_001183139.1_FaliES1 | cds-NP_014098.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000390.1:1-220:+ | gene-YNL301C_JAY291 | rna-NM_001183139.1_JAY291 | cds-NP_014098.1_JAY291 | 39.2 | 39.2 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005420.1:66973-67965:- | gene-YNL301C_MUCL30387 | rna-NM_001183139.1_MUCL30387 | cds-NP_014098.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005452.1:60007-60999:- | gene-YNL301C_MUCL30388 | rna-NM_001183139.1_MUCL30388 | cds-NP_014098.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005292.1:55349-56340:- | gene-YNL301C_MUCL39482 | rna-NM_001183139.1_MUCL39482 | cds-NP_014098.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005436.1:57038-58030:- | gene-YNL301C_MUCL42920 | rna-NM_001183139.1_MUCL42920 | cds-NP_014098.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011823.1:63539-64531:- | gene-YNL301C_NCIM3186 | rna-NM_001183139.1_NCIM3186 | cds-NP_014098.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005276.1:56681-57672:- | gene-YNL301C_NCYC1407 | rna-NM_001183139.1_NCYC1407 | cds-NP_014098.1_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994153.1:53879-54871:- | gene-YNL301C_PE2H3 | rna-NM_001183139.1_PE2H3 | cds-NP_014098.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999885.1:53267-54259:- | gene-YNL301C_PE2H4 | rna-NM_001183139.1_PE2H4 | cds-NP_014098.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001146.8:63570-64562:- | gene-YNL301C_S288C | rna-NM_001183139.1_S288C | cds-NP_014098.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000052.1:32657-33649:+ | gene-YNL301C_SA1 | rna-NM_001183139.1_SA1 | cds-NP_014098.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005500.1:56159-57150:- | gene-YNL301C_ThermosaccDry | rna-NM_001183139.1_ThermosaccDry | cds-NP_014098.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005468.1:68697-69689:- | gene-YNL301C_VR1 | rna-NM_001183139.1_VR1 | cds-NP_014098.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000029.1:47371-48362:- | gene-YNL301C_ZTW1 | rna-NM_001183139.1_ZTW1 | cds-NP_014098.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047500.1:65410-66405:- | gene-YNL301C_Sparadoxus | rna-NM_001183139.1_Sparadoxus | cds-NP_014098.1_Sparadoxus | 90.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |