Gene name: RPL18A
Reference locus (S288C): YOL120C
Gene biotype: protein_coding
Description: Ribosomal 60S subunit protein L18A; intron of RPL18A pre-mRNA forms stem-loop structures that are a target for Rnt1p cleavage leading to degradation; homologous to mammalian ribosomal protein L18, no bacterial homolog; RPL18A has a paralog, RPL18B, that arose from the whole genome duplication
Top 10 interactors (score): RPS28B (0.999); RPS17A (0.999); RPS23B (0.999); RPS20 (0.999); RPL11A (0.999); RPS21A (0.999); RPL42B (0.999); RPS25A (0.999); RPL24B (0.999); RPS7B (0.999); RPL10 (0.999); RPS31 (0.999); ASC1 (0.999); RPL7A (0.999); RPL35B (0.999); RPL43A (0.999); RPS29A (0.999); RPS1A (0.999); RPL21A (0.999); RPS0A (0.999)
Homologues (species, bitscore): RPL18 (Homo sapiens, 203.4); Rpl18 (Mus musculus, 208.0); rpl18 (Danio rerio, 198.0); rpl18 (Xenopus tropicalis, 184.5); RpL18 (Drosophila melanogaster, 207.6); rpl-18 (Caenorhabditis elegans, 212.2); AT5G27850 (Arabidopsis thaliana, 217.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:82047-83054:- | gene-YOL120C_AKU4011 | rna-NM_001183374.1_AKU4011 | cds-NP_014521.1_AKU4011 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000172.1:47672-48679:- | gene-YOL120C_BG1 | rna-NM_001183374.1_BG1 | cds-NP_014521.1_BG1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:83323-84330:- | gene-YOL120C_Bruggeman | rna-NM_001183374.1_Bruggeman | cds-NP_014521.1_Bruggeman | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:82531-83538:- | gene-YOL120C_CAT1 | rna-NM_001183374.1_CAT1 | cds-NP_014521.1_CAT1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:76526-77532:- | gene-YOL120C_CBS1585 | rna-NM_001183374.1_CBS1585 | cds-NP_014521.1_CBS1585 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:82374-83381:- | gene-YOL120C_CBS436 | rna-NM_001183374.1_CBS436 | cds-NP_014521.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005341.1:76389-77395:- | gene-YOL120C_CBS6412 | rna-NM_001183374.1_CBS6412 | cds-NP_014521.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:82857-83863:- | gene-YOL120C_CBS6413 | rna-NM_001183374.1_CBS6413 | cds-NP_014521.1_CBS6413 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:93292-94299:- | gene-YOL120C_CENPK1137D | rna-NM_001183374.1_CENPK1137D | cds-NP_014521.1_CENPK1137D | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005485.1:80299-81305:- | gene-YOL120C_EthanolRed | rna-NM_001183374.1_EthanolRed | cds-NP_014521.1_EthanolRed | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:82328-83334:- | gene-YOL120C_FaliES1 | rna-NM_001183374.1_FaliES1 | cds-NP_014521.1_FaliES1 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000329.1:1-220:+ | gene-YOL120C_JAY291 | rna-NM_001183374.1_JAY291 | cds-NP_014521.1_JAY291 | 39.2 | 39.2 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:87964-88972:- | gene-YOL120C_MUCL30387 | rna-NM_001183374.1_MUCL30387 | cds-NP_014521.1_MUCL30387 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:90962-91968:- | gene-YOL120C_MUCL30388 | rna-NM_001183374.1_MUCL30388 | cds-NP_014521.1_MUCL30388 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:84464-85470:- | gene-YOL120C_MUCL39482 | rna-NM_001183374.1_MUCL39482 | cds-NP_014521.1_MUCL39482 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:100342-101349:- | gene-YOL120C_MUCL42920 | rna-NM_001183374.1_MUCL42920 | cds-NP_014521.1_MUCL42920 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:93284-94291:- | gene-YOL120C_NCIM3186 | rna-NM_001183374.1_NCIM3186 | cds-NP_014521.1_NCIM3186 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:90497-91503:- | gene-YOL120C_NCYC1407 | rna-NM_001183374.1_NCYC1407 | cds-NP_014521.1_NCYC1407 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:68931-69938:- | gene-YOL120C_PE2H3 | rna-NM_001183374.1_PE2H3 | cds-NP_014521.1_PE2H3 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:85879-86886:- | gene-YOL120C_PE2H4 | rna-NM_001183374.1_PE2H4 | cds-NP_014521.1_PE2H4 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:93395-94402:- | gene-YOL120C_S288C | rna-NM_001183374.1_S288C | cds-NP_014521.1_S288C | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000001.1:66821-67831:- | gene-YOL120C_SA1 | rna-NM_001183374.1_SA1 | cds-NP_014521.1_SA1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:81466-82472:- | gene-YOL120C_ThermosaccDry | rna-NM_001183374.1_ThermosaccDry | cds-NP_014521.1_ThermosaccDry | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:82126-83136:- | gene-YOL120C_VR1 | rna-NM_001183374.1_VR1 | cds-NP_014521.1_VR1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000031.1:81217-82222:- | gene-YOL120C_ZTW1 | rna-NM_001183374.1_ZTW1 | cds-NP_014521.1_ZTW1 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:84002-85010:- | gene-YOL120C_Sparadoxus | rna-NM_001183374.1_Sparadoxus | cds-NP_014521.1_Sparadoxus | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |