Gene name: RPL17B
Reference locus (S288C): YJL177W
Gene biotype: protein_coding
Description: Ribosomal 60S subunit protein L17B; required for processing of 27SB pre-rRNA and formation of stable 66S assembly intermediates; homologous to mammalian ribosomal protein L17 and bacterial L22; RPL17B has a paralog, RPL17A, that arose from the whole genome duplication
Top 10 interactors (score): RPL14A (0.999); RPL9A (0.999); RPL12B (0.999); RPS7A (0.999); RPL1B (0.999); RPL5 (0.999); RPL43B (0.999); RPS24A (0.999); RPS24B (0.999); RPS0B (0.999); RPL7B (0.999); RPL26B (0.999); RPL23B (0.999); RPS18B (0.999); RPL36A (0.999); RPL37A (0.999); RPL31B (0.999); RPL38 (0.999); RPS5 (0.999); RPL36B (0.999)
Homologues (species, bitscore): RPL17 (Homo sapiens, 205.3); Rpl17 (Mus musculus, 204.9); rpl17 (Danio rerio, 203.4); rpl17 (Xenopus tropicalis, 203.8); RpL17 (Drosophila melanogaster, 200.3); rpl-17 (Caenorhabditis elegans, 178.3); AT1G67430 (Arabidopsis thaliana, 197.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005304.1:79180-80051:+ | gene-YJL177W_AKU4011 | rna-NM_001181610.1_AKU4011 | cds-NP_012358.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000181.1:56513-57384:+ | gene-YJL177W_BG1 | rna-NM_001181610.1_BG1 | cds-NP_012358.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005512.1:91009-91880:+ | gene-YJL177W_Bruggeman | rna-NM_001181610.1_Bruggeman | cds-NP_012358.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005528.1:94478-95349:+ | gene-YJL177W_CAT1 | rna-NM_001181610.1_CAT1 | cds-NP_012358.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005368.1:84815-85686:+ | gene-YJL177W_CBS1585 | rna-NM_001181610.1_CBS1585 | cds-NP_012358.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005352.1:109574-110445:+ | gene-YJL177W_CBS436 | rna-NM_001181610.1_CBS436 | cds-NP_012358.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005336.1:81297-82168:+ | gene-YJL177W_CBS6412 | rna-NM_001181610.1_CBS6412 | cds-NP_012358.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005320.1:82290-83161:+ | gene-YJL177W_CBS6413 | rna-NM_001181610.1_CBS6413 | cds-NP_012358.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001531.1:73261-74131:+ | gene-YJL177W_CENPK1137D | rna-NM_001181610.1_CENPK1137D | cds-NP_012358.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005480.1:83476-84347:+ | gene-YJL177W_EthanolRed | rna-NM_001181610.1_EthanolRed | cds-NP_012358.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005544.1:88753-89624:+ | gene-YJL177W_FaliES1 | rna-NM_001181610.1_FaliES1 | cds-NP_012358.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000164.1:29103-29974:- | gene-YJL177W_JAY291 | rna-NM_001181610.1_JAY291 | cds-NP_012358.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005416.1:92737-93608:+ | gene-YJL177W_MUCL30387 | rna-NM_001181610.1_MUCL30387 | cds-NP_012358.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005448.1:88898-89769:+ | gene-YJL177W_MUCL30388 | rna-NM_001181610.1_MUCL30388 | cds-NP_012358.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005288.1:83556-84427:+ | gene-YJL177W_MUCL39482 | rna-NM_001181610.1_MUCL39482 | cds-NP_012358.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005432.1:88166-89037:+ | gene-YJL177W_MUCL42920 | rna-NM_001181610.1_MUCL42920 | cds-NP_012358.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011819.1:90765-91636:+ | gene-YJL177W_NCIM3186 | rna-NM_001181610.1_NCIM3186 | cds-NP_012358.1_NCIM3186 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005272.1:82168-83039:+ | gene-YJL177W_NCYC1407 | rna-NM_001181610.1_NCYC1407 | cds-NP_012358.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994149.1:94879-95750:+ | gene-YJL177W_PE2H3 | rna-NM_001181610.1_PE2H3 | cds-NP_012358.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999881.1:94518-95389:+ | gene-YJL177W_PE2H4 | rna-NM_001181610.1_PE2H4 | cds-NP_012358.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001142.9:90786-91657:+ | gene-YJL177W_S288C | rna-NM_001181610.1_S288C | cds-NP_012358.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000022.1:62215-63087:- | gene-YJL177W_SA1 | rna-NM_001181610.1_SA1 | cds-NP_012358.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005496.1:81947-82818:+ | gene-YJL177W_ThermosaccDry | rna-NM_001181610.1_ThermosaccDry | cds-NP_012358.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005464.1:88830-89701:+ | gene-YJL177W_VR1 | rna-NM_001181610.1_VR1 | cds-NP_012358.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000021.1:69533-70404:+ | gene-YJL177W_ZTW1 | rna-NM_001181610.1_ZTW1 | cds-NP_012358.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047496.1:93937-94789:+ | gene-YJL177W_Sparadoxus | rna-NM_001181610.1_Sparadoxus | cds-NP_012358.1_Sparadoxus | 96.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |