Gene name: RPL17A
Reference locus (S288C): YKL180W
Gene biotype: protein_coding
Description: Ribosomal 60S subunit protein L17A; required for processing of 27SB pre-rRNA and formation of stable 66S assembly intermediates; copurifies with the Dam1 complex (aka DASH complex); homologous to mammalian ribosomal protein L17 and bacterial L22; RPL17A has a paralog, RPL17B, that arose from the whole genome duplication; protein abundance increases in response to DNA replication stress
Top 10 interactors (score): RPL36A (0.999); RPS18B (0.999); RPS9A (0.999); RPL28 (0.999); RPL26A (0.999); RPS9B (0.999); RPL31A (0.999); RPS16A (0.999); RPS19B (0.999); RPL2B (0.999); RPL6B (0.999); RPS11B (0.999); RPP1A (0.999); RPS15 (0.999); RPS14A (0.999); RPL36B (0.999); RPL23B (0.999); RPS0B (0.999); RPL7B (0.999); RPL26B (0.999)
Homologues (species, bitscore): RPL17 (Homo sapiens, 205.7); Rpl17 (Mus musculus, 205.3); rpl17 (Danio rerio, 204.1); rpl17 (Xenopus tropicalis, 204.5); RpL17 (Drosophila melanogaster, 201.1); rpl-17 (Caenorhabditis elegans, 177.9); AT1G67430 (Arabidopsis thaliana, 198.7)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005305.1:96124-96985:+ | gene-YKL180W_AKU4011 | rna-NM_001179746.1_AKU4011 | cds-NP_012741.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000030.1:72651-73511:+ | gene-YKL180W_BG1 | rna-NM_001179746.1_BG1 | cds-NP_012741.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005513.1:113512-114373:+ | gene-YKL180W_Bruggeman | rna-NM_001179746.1_Bruggeman | cds-NP_012741.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005529.1:108469-109329:+ | gene-YKL180W_CAT1 | rna-NM_001179746.1_CAT1 | cds-NP_012741.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005369.1:108106-108967:+ | gene-YKL180W_CBS1585 | rna-NM_001179746.1_CBS1585 | cds-NP_012741.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005353.1:106865-107725:+ | gene-YKL180W_CBS436 | rna-NM_001179746.1_CBS436 | cds-NP_012741.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005337.1:93696-94557:+ | gene-YKL180W_CBS6412 | rna-NM_001179746.1_CBS6412 | cds-NP_012741.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005321.1:108824-109685:+ | gene-YKL180W_CBS6413 | rna-NM_001179746.1_CBS6413 | cds-NP_012741.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001532.1:109095-109955:+ | gene-YKL180W_CENPK1137D | rna-NM_001179746.1_CENPK1137D | cds-NP_012741.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005481.1:107010-107871:+ | gene-YKL180W_EthanolRed | rna-NM_001179746.1_EthanolRed | cds-NP_012741.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005545.1:107711-108572:+ | gene-YKL180W_FaliES1 | rna-NM_001179746.1_FaliES1 | cds-NP_012741.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000006.2:106694-107554:+ | gene-YKL180W_JAY291 | rna-NM_001179746.1_JAY291 | cds-NP_012741.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005417.1:115813-116674:+ | gene-YKL180W_MUCL30387 | rna-NM_001179746.1_MUCL30387 | cds-NP_012741.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005449.1:110156-111017:+ | gene-YKL180W_MUCL30388 | rna-NM_001179746.1_MUCL30388 | cds-NP_012741.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005289.1:108163-109024:+ | gene-YKL180W_MUCL39482 | rna-NM_001179746.1_MUCL39482 | cds-NP_012741.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005433.1:112495-113355:+ | gene-YKL180W_MUCL42920 | rna-NM_001179746.1_MUCL42920 | cds-NP_012741.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011820.1:109258-110118:+ | gene-YKL180W_NCIM3186 | rna-NM_001179746.1_NCIM3186 | cds-NP_012741.1_NCIM3186 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005273.1:108187-109048:+ | gene-YKL180W_NCYC1407 | rna-NM_001179746.1_NCYC1407 | cds-NP_012741.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994150.1:115238-116098:+ | gene-YKL180W_PE2H3 | rna-NM_001179746.1_PE2H3 | cds-NP_012741.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999882.1:111532-112392:+ | gene-YKL180W_PE2H4 | rna-NM_001179746.1_PE2H4 | cds-NP_012741.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001143.9:109269-110129:+ | gene-YKL180W_S288C | rna-NM_001179746.1_S288C | cds-NP_012741.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000008.1:25471-26331:+ | gene-YKL180W_SA1 | rna-NM_001179746.1_SA1 | cds-NP_012741.1_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005497.1:108411-109272:+ | gene-YKL180W_ThermosaccDry | rna-NM_001179746.1_ThermosaccDry | cds-NP_012741.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005465.1:106943-107803:+ | gene-YKL180W_VR1 | rna-NM_001179746.1_VR1 | cds-NP_012741.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000022.1:106814-107674:+ | gene-YKL180W_ZTW1 | rna-NM_001179746.1_ZTW1 | cds-NP_012741.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047497.1:121352-122214:+ | gene-YKL180W_Sparadoxus | rna-NM_001179746.1_Sparadoxus | cds-NP_012741.1_Sparadoxus | 97.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |