Gene name: RPL16B
Reference locus (S288C): YNL069C
Gene biotype: protein_coding
Description: Ribosomal 60S subunit protein L16B; N-terminally acetylated, binds 5.8 S rRNA; transcriptionally regulated by Rap1p; homologous to mammalian ribosomal protein L13A and bacterial L13; RPL16B has a paralog, RPL16A, that arose from the whole genome duplication
Top 10 interactors (score): RPL19A (0.999); RPS12 (0.999); RPL13B (0.999); RPS16B (0.999); RPL20A (0.999); RPS3 (0.999); RPS2 (0.999); RPL40B (0.999); RPL9B (0.999); RPL35A (0.999); RPL8B (0.999); RPL13A (0.999); RPL27B (0.999); RPL1A (0.999); RPL15A (0.999); RPL16A (0.999); RPL6A (0.999); RPL12A (0.999); RPS10A (0.999); RPS11A (0.999)
Homologues (species, bitscore): RPL13A (Homo sapiens, 226.1); Rpl13a (Mus musculus, 228.4); rpl13a (Danio rerio, 225.7); rpl13a (Xenopus tropicalis, 228.4); RpL13A (Drosophila melanogaster, 213.0); rpl-16 (Caenorhabditis elegans, 192.2); AT3G24830 (Arabidopsis thaliana, 212.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005308.1:487627-488672:- | gene-YNL069C_AKU4011 | rna-NM_001182907.1_AKU4011 | cds-NP_014330.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000155.1:391641-392686:- | gene-YNL069C_BG1 | rna-NM_001182907.1_BG1 | cds-NP_014330.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005516.1:498354-499399:- | gene-YNL069C_Bruggeman | rna-NM_001182907.1_Bruggeman | cds-NP_014330.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005532.1:541348-542393:- | gene-YNL069C_CAT1 | rna-NM_001182907.1_CAT1 | cds-NP_014330.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005372.1:488295-489340:- | gene-YNL069C_CBS1585 | rna-NM_001182907.1_CBS1585 | cds-NP_014330.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005356.1:556710-557755:- | gene-YNL069C_CBS436 | rna-NM_001182907.1_CBS436 | cds-NP_014330.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005340.1:483389-484434:- | gene-YNL069C_CBS6412 | rna-NM_001182907.1_CBS6412 | cds-NP_014330.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005324.1:484705-485750:- | gene-YNL069C_CBS6413 | rna-NM_001182907.1_CBS6413 | cds-NP_014330.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001535.1:487817-488862:- | gene-YNL069C_CENPK1137D | rna-NM_001182907.1_CENPK1137D | cds-NP_014330.1_CENPK1137D | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005484.1:490445-491490:- | gene-YNL069C_EthanolRed | rna-NM_001182907.1_EthanolRed | cds-NP_014330.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005548.1:480970-482015:- | gene-YNL069C_FaliES1 | rna-NM_001182907.1_FaliES1 | cds-NP_014330.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000001.1:7411-8456:- | gene-YNL069C_JAY291 | rna-NM_001182907.1_JAY291 | cds-NP_014330.1_JAY291 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005420.1:494516-495561:- | gene-YNL069C_MUCL30387 | rna-NM_001182907.1_MUCL30387 | cds-NP_014330.1_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005452.1:529916-530961:- | gene-YNL069C_MUCL30388 | rna-NM_001182907.1_MUCL30388 | cds-NP_014330.1_MUCL30388 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005292.1:485697-486742:- | gene-YNL069C_MUCL39482 | rna-NM_001182907.1_MUCL39482 | cds-NP_014330.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005436.1:489626-490671:- | gene-YNL069C_MUCL42920 | rna-NM_001182907.1_MUCL42920 | cds-NP_014330.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011823.1:493925-494970:- | gene-YNL069C_NCIM3186 | rna-NM_001182907.1_NCIM3186 | cds-NP_014330.1_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005276.1:487749-488794:- | gene-YNL069C_NCYC1407 | rna-NM_001182907.1_NCYC1407 | cds-NP_014330.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994153.1:490988-492033:- | gene-YNL069C_PE2H3 | rna-NM_001182907.1_PE2H3 | cds-NP_014330.1_PE2H3 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999885.1:486063-487108:- | gene-YNL069C_PE2H4 | rna-NM_001182907.1_PE2H4 | cds-NP_014330.1_PE2H4 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001146.8:493956-495001:- | gene-YNL069C_S288C | rna-NM_001182907.1_S288C | cds-NP_014330.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000024.1:78907-79952:- | gene-YNL069C_SA1 | rna-NM_001182907.1_SA1 | cds-NP_014330.1_SA1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005500.1:481845-482890:- | gene-YNL069C_ThermosaccDry | rna-NM_001182907.1_ThermosaccDry | cds-NP_014330.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005468.1:500961-502006:- | gene-YNL069C_VR1 | rna-NM_001182907.1_VR1 | cds-NP_014330.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000030.1:391193-392238:- | gene-YNL069C_ZTW1 | rna-NM_001182907.1_ZTW1 | cds-NP_014330.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047500.1:497395-498442:- | gene-YNL069C_Sparadoxus | rna-NM_001182907.1_Sparadoxus | cds-NP_014330.1_Sparadoxus | 97.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |