Gene name: RPL16A
Reference locus (S288C): YIL133C
Gene biotype: protein_coding
Description: Ribosomal 60S subunit protein L16A; N-terminally acetylated, binds 5.8 S rRNA; transcriptionally regulated by Rap1p; homologous to mammalian ribosomal protein L13A and bacterial L13; RPL16A has a paralog, RPL16B, that arose from the whole genome duplication; protein abundance increases in response to DNA replication stress
Top 10 interactors (score): RPS1B (0.999); RPL35B (0.999); RPL18A (0.999); RPS7B (0.999); RPS25A (0.999); RPS28B (0.999); RPL42B (0.999); RPL7A (0.999); RPL25 (0.999); RPL10 (0.999); RPS31 (0.999); ASC1 (0.999); RPL8A (0.999); RPL11A (0.999); RPS21A (0.999); RPS20 (0.999); RPS23B (0.999); RPS17A (0.999); RPS30B (0.999); RPL22A (0.999)
Homologues (species, bitscore): RPL13A (Homo sapiens, 230.3); Rpl13a (Mus musculus, 230.3); rpl13a (Danio rerio, 230.7); rpl13a (Xenopus tropicalis, 235.0); RpL13A (Drosophila melanogaster, 222.6); rpl-16 (Caenorhabditis elegans, 203.8); AT3G24830 (Arabidopsis thaliana, 218.0)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005303.1:99744-100633:- | gene-YIL133C_AKU4011 | rna-NM_001179481.1_AKU4011 | cds-NP_012133.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000174.1:36728-37617:+ | gene-YIL133C_BG1 | rna-NM_001179481.1_BG1 | cds-NP_012133.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005511.1:102502-103391:- | gene-YIL133C_Bruggeman | rna-NM_001179481.1_Bruggeman | cds-NP_012133.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005527.1:96314-97203:- | gene-YIL133C_CAT1 | rna-NM_001179481.1_CAT1 | cds-NP_012133.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005367.1:99946-100835:- | gene-YIL133C_CBS1585 | rna-NM_001179481.1_CBS1585 | cds-NP_012133.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005351.1:91086-91975:- | gene-YIL133C_CBS436 | rna-NM_001179481.1_CBS436 | cds-NP_012133.1_CBS436 | 98.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005335.1:97476-98365:- | gene-YIL133C_CBS6412 | rna-NM_001179481.1_CBS6412 | cds-NP_012133.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005319.1:91632-92521:- | gene-YIL133C_CBS6413 | rna-NM_001179481.1_CBS6413 | cds-NP_012133.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001530.1:90234-91123:- | gene-YIL133C_CENPK1137D | rna-NM_001179481.1_CENPK1137D | cds-NP_012133.1_CENPK1137D | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005479.1:85280-86169:- | gene-YIL133C_EthanolRed | rna-NM_001179481.1_EthanolRed | cds-NP_012133.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005543.1:101083-101972:- | gene-YIL133C_FaliES1 | rna-NM_001179481.1_FaliES1 | cds-NP_012133.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000319.1:6381-7270:+ | gene-YIL133C_JAY291 | rna-NM_001179481.1_JAY291 | cds-NP_012133.1_JAY291 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005415.1:100262-101151:- | gene-YIL133C_MUCL30387 | rna-NM_001179481.1_MUCL30387 | cds-NP_012133.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005447.1:99942-100831:- | gene-YIL133C_MUCL30388 | rna-NM_001179481.1_MUCL30388 | cds-NP_012133.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005287.1:100874-101763:- | gene-YIL133C_MUCL39482 | rna-NM_001179481.1_MUCL39482 | cds-NP_012133.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005431.1:104074-104963:- | gene-YIL133C_MUCL42920 | rna-NM_001179481.1_MUCL42920 | cds-NP_012133.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011818.1:98527-99416:- | gene-YIL133C_NCIM3186 | rna-NM_001179481.1_NCIM3186 | cds-NP_012133.1_NCIM3186 | 87.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005271.1:104838-105727:- | gene-YIL133C_NCYC1407 | rna-NM_001179481.1_NCYC1407 | cds-NP_012133.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994148.1:99462-100351:- | gene-YIL133C_PE2H3 | rna-NM_001179481.1_PE2H3 | cds-NP_012133.1_PE2H3 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999880.1:93424-94313:- | gene-YIL133C_PE2H4 | rna-NM_001179481.1_PE2H4 | cds-NP_012133.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001141.2:98527-99416:- | gene-YIL133C_S288C | rna-NM_001179481.1_S288C | cds-NP_012133.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000050.1:77103-77992:- | gene-YIL133C_SA1 | rna-NM_001179481.1_SA1 | cds-NP_012133.1_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005495.1:99693-100582:- | gene-YIL133C_ThermosaccDry | rna-NM_001179481.1_ThermosaccDry | cds-NP_012133.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005463.1:96851-97740:- | gene-YIL133C_VR1 | rna-NM_001179481.1_VR1 | cds-NP_012133.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000019.1:74674-75563:- | gene-YIL133C_ZTW1 | rna-NM_001179481.1_ZTW1 | cds-NP_012133.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047495.1:92520-93415:- | gene-YIL133C_Sparadoxus | rna-NM_001179481.1_Sparadoxus | cds-NP_012133.1_Sparadoxus | 97.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |