Gene name: RPL15B
Reference locus (S288C): YMR121C
Gene biotype: protein_coding
Description: Ribosomal 60S subunit protein L15B; binds to 5.8 S rRNA; homologous to mammalian ribosomal protein L15, no bacterial homolog; RPL15B has a paralog, RPL15A, that arose from the whole genome duplication; relocalizes from nucleus to nucleolus upon DNA replication stress
Top 10 interactors (score): RPL39 (0.999); RPL3 (0.999); RPL27A (0.999); RPL4A (0.999); RPS27B (0.999); RPS23A (0.999); RPL4B (0.999); RPL30 (0.999); RPS3 (0.999); RPL35B (0.999); RPL10 (0.999); RPS28B (0.999); RPL11A (0.999); RPL25 (0.999); RPL5 (0.999); RPL38 (0.999); RPS15 (0.999); RPL6B (0.999); RPS28A (0.999); RPL28 (0.999)
Homologues (species, bitscore): RPL15 (Homo sapiens, 303.9); Rpl15 (Mus musculus, 303.9); rpl15 (Danio rerio, 298.1); rpl15 (Xenopus tropicalis, 296.6); RpL15 (Drosophila melanogaster, 285.8); rpl-15 (Caenorhabditis elegans, 271.2); AT4G16720 (Arabidopsis thaliana, 302.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:549112-549726:- | gene-YMR121C_AKU4011 | rna-NM_001182622.1_AKU4011 | cds-NP_013840.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000068.1:122811-123425:+ | gene-YMR121C_BG1 | rna-NM_001182622.1_BG1 | cds-NP_013840.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:492034-492648:- | gene-YMR121C_Bruggeman | rna-NM_001182622.1_Bruggeman | cds-NP_013840.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:493706-494320:- | gene-YMR121C_CAT1 | rna-NM_001182622.1_CAT1 | cds-NP_013840.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:482035-482649:- | gene-YMR121C_CBS1585 | rna-NM_001182622.1_CBS1585 | cds-NP_013840.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:485899-486513:- | gene-YMR121C_CBS436 | rna-NM_001182622.1_CBS436 | cds-NP_013840.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:595028-595642:- | gene-YMR121C_CBS6412 | rna-NM_001182622.1_CBS6412 | cds-NP_013840.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:480595-481209:- | gene-YMR121C_CBS6413 | rna-NM_001182622.1_CBS6413 | cds-NP_013840.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:504262-504877:- | gene-YMR121C_CENPK1137D | rna-NM_001182622.1_CENPK1137D | cds-NP_013840.1_CENPK1137D | 69.3 | 100.0 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005483.1:480353-480967:- | gene-YMR121C_EthanolRed | rna-NM_001182622.1_EthanolRed | cds-NP_013840.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:486267-486881:- | gene-YMR121C_FaliES1 | rna-NM_001182622.1_FaliES1 | cds-NP_013840.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000294.1:40214-40828:+ | gene-YMR121C_JAY291 | rna-NM_001182622.1_JAY291 | cds-NP_013840.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:487013-487627:- | gene-YMR121C_MUCL30387 | rna-NM_001182622.1_MUCL30387 | cds-NP_013840.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:492129-492743:- | gene-YMR121C_MUCL30388 | rna-NM_001182622.1_MUCL30388 | cds-NP_013840.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:482736-483350:- | gene-YMR121C_MUCL39482 | rna-NM_001182622.1_MUCL39482 | cds-NP_013840.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:489149-489763:- | gene-YMR121C_MUCL42920 | rna-NM_001182622.1_MUCL42920 | cds-NP_013840.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:509688-510302:- | gene-YMR121C_NCIM3186 | rna-NM_001182622.1_NCIM3186 | cds-NP_013840.1_NCIM3186 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:482374-482988:- | gene-YMR121C_NCYC1407 | rna-NM_001182622.1_NCYC1407 | cds-NP_013840.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:492806-493420:- | gene-YMR121C_PE2H3 | rna-NM_001182622.1_PE2H3 | cds-NP_013840.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:493260-493874:- | gene-YMR121C_PE2H4 | rna-NM_001182622.1_PE2H4 | cds-NP_013840.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:509734-510348:- | gene-YMR121C_S288C | rna-NM_001182622.1_S288C | cds-NP_013840.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000048.1:60914-61528:+ | gene-YMR121C_SA1 | rna-NM_001182622.1_SA1 | cds-NP_013840.1_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:482751-483365:- | gene-YMR121C_ThermosaccDry | rna-NM_001182622.1_ThermosaccDry | cds-NP_013840.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:494755-495369:- | gene-YMR121C_VR1 | rna-NM_001182622.1_VR1 | cds-NP_013840.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000027.1:457757-458371:- | gene-YMR121C_ZTW1 | rna-NM_001182622.1_ZTW1 | cds-NP_013840.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:494001-494615:- | gene-YMR121C_Sparadoxus | rna-NM_001182622.1_Sparadoxus | cds-NP_013840.1_Sparadoxus | 92.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |