Gene name: RPL15A
Reference locus (S288C): YLR029C
Gene biotype: protein_coding
Description: Ribosomal 60S subunit protein L15A; binds to 5.8 S rRNA; homologous to mammalian ribosomal protein L15, no bacterial homolog; RPL15A has a paralog, RPL15B, that arose from the whole genome duplication
Top 10 interactors (score): RPL3 (0.999); RPL11B (0.999); RPL29 (0.999); RPL32 (0.999); RPL19B (0.999); RPL42A (0.999); RPL18B (0.999); RPL34A (0.999); RPP2A (0.999); RPL39 (0.999); RPS25B (0.999); RPS13 (0.999); RPS22A (0.999); RPL2A (0.999); RPL27A (0.999); RPL14B (0.999); RPS6A (0.999); RPL4A (0.999); RPS26B (0.999); RPS29B (0.999)
Homologues (species, bitscore): RPL15 (Homo sapiens, 303.9); Rpl15 (Mus musculus, 303.9); rpl15 (Danio rerio, 297.7); rpl15 (Xenopus tropicalis, 296.6); RpL15 (Drosophila melanogaster, 285.4); rpl-15 (Caenorhabditis elegans, 271.2); AT4G16720 (Arabidopsis thaliana, 301.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:189907-190521:- | gene-YLR029C_AKU4011 | rna-NM_001181916.1_AKU4011 | cds-NP_013129.1_AKU4011 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000212.1:153182-153796:- | gene-YLR029C_BG1 | rna-NM_001181916.1_BG1 | cds-NP_013129.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:200299-200913:- | gene-YLR029C_Bruggeman | rna-NM_001181916.1_Bruggeman | cds-NP_013129.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:200626-201240:- | gene-YLR029C_CAT1 | rna-NM_001181916.1_CAT1 | cds-NP_013129.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:197533-198147:- | gene-YLR029C_CBS1585 | rna-NM_001181916.1_CBS1585 | cds-NP_013129.1_CBS1585 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:188166-188780:- | gene-YLR029C_CBS436 | rna-NM_001181916.1_CBS436 | cds-NP_013129.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:195943-196557:- | gene-YLR029C_CBS6412 | rna-NM_001181916.1_CBS6412 | cds-NP_013129.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:197795-198409:- | gene-YLR029C_CBS6413 | rna-NM_001181916.1_CBS6413 | cds-NP_013129.1_CBS6413 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:187215-187829:- | gene-YLR029C_CENPK1137D | rna-NM_001181916.1_CENPK1137D | cds-NP_013129.1_CENPK1137D | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:189918-190532:- | gene-YLR029C_EthanolRed | rna-NM_001181916.1_EthanolRed | cds-NP_013129.1_EthanolRed | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:189828-190442:- | gene-YLR029C_FaliES1 | rna-NM_001181916.1_FaliES1 | cds-NP_013129.1_FaliES1 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000431.1:33681-34295:- | gene-YLR029C_JAY291 | rna-NM_001181916.1_JAY291 | cds-NP_013129.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:197653-198267:- | gene-YLR029C_MUCL30387 | rna-NM_001181916.1_MUCL30387 | cds-NP_013129.1_MUCL30387 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:204276-204890:- | gene-YLR029C_MUCL30388 | rna-NM_001181916.1_MUCL30388 | cds-NP_013129.1_MUCL30388 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:198028-198642:- | gene-YLR029C_MUCL39482 | rna-NM_001181916.1_MUCL39482 | cds-NP_013129.1_MUCL39482 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:197929-198543:- | gene-YLR029C_MUCL42920 | rna-NM_001181916.1_MUCL42920 | cds-NP_013129.1_MUCL42920 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:201950-202564:- | gene-YLR029C_NCIM3186 | rna-NM_001181916.1_NCIM3186 | cds-NP_013129.1_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:190086-190700:- | gene-YLR029C_NCYC1407 | rna-NM_001181916.1_NCYC1407 | cds-NP_013129.1_NCYC1407 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:195965-196579:- | gene-YLR029C_PE2H3 | rna-NM_001181916.1_PE2H3 | cds-NP_013129.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:195706-196320:- | gene-YLR029C_PE2H4 | rna-NM_001181916.1_PE2H4 | cds-NP_013129.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:201976-202590:- | gene-YLR029C_S288C | rna-NM_001181916.1_S288C | cds-NP_013129.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000046.1:33818-34432:- | gene-YLR029C_SA1 | rna-NM_001181916.1_SA1 | cds-NP_013129.1_SA1 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:189994-190608:- | gene-YLR029C_ThermosaccDry | rna-NM_001181916.1_ThermosaccDry | cds-NP_013129.1_ThermosaccDry | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:203414-204028:- | gene-YLR029C_VR1 | rna-NM_001181916.1_VR1 | cds-NP_013129.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000023.1:189356-189970:- | gene-YLR029C_ZTW1 | rna-NM_001181916.1_ZTW1 | cds-NP_013129.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:198140-198754:- | gene-YLR029C_Sparadoxus | rna-NM_001181916.1_Sparadoxus | cds-NP_013129.1_Sparadoxus | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |