Gene name: RPL13B
Reference locus (S288C): YMR142C
Gene biotype: protein_coding
Description: Ribosomal 60S subunit protein L13B; not essential for viability; homologous to mammalian ribosomal protein L13, no bacterial homolog; RPL13B has a paralog, RPL13A, that arose from the whole genome duplication
Top 10 interactors (score): RPL26B (0.999); RPS0B (0.999); RPL7B (0.999); RPS18B (0.999); RPL36A (0.999); RPL1B (0.999); RPL5 (0.999); RPS24A (0.999); RPL26A (0.999); RPL28 (0.999); RPP1A (0.999); RPS11B (0.999); RPS15 (0.999); RPL2B (0.999); RPL6B (0.999); RPL36B (0.999); RPL31A (0.999); RPS19B (0.999); RPL37A (0.999); RPL38 (0.999)
Homologues (species, bitscore): RPL13 (Homo sapiens, 177.6); Rpl13 (Mus musculus, 179.1); rpl13 (Danio rerio, 186.0); rpl13 (Xenopus tropicalis, 171.4); RpL13 (Drosophila melanogaster, 152.9); rpl-13 (Caenorhabditis elegans, 171.4); BBC1 (Arabidopsis thaliana, 153.7)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:589703-590705:- | gene-YMR142C_AKU4011 | rna-NM_001182644.1_AKU4011 | cds-NP_013862.1_AKU4011 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000068.1:81828-82829:+ | gene-YMR142C_BG1 | rna-NM_001182644.1_BG1 | cds-NP_013862.1_BG1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:532886-533887:- | gene-YMR142C_Bruggeman | rna-NM_001182644.1_Bruggeman | cds-NP_013862.1_Bruggeman | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:535101-536102:- | gene-YMR142C_CAT1 | rna-NM_001182644.1_CAT1 | cds-NP_013862.1_CAT1 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:522627-523629:- | gene-YMR142C_CBS1585 | rna-NM_001182644.1_CBS1585 | cds-NP_013862.1_CBS1585 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:526515-527516:- | gene-YMR142C_CBS436 | rna-NM_001182644.1_CBS436 | cds-NP_013862.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:635620-636622:- | gene-YMR142C_CBS6412 | rna-NM_001182644.1_CBS6412 | cds-NP_013862.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:521187-522189:- | gene-YMR142C_CBS6413 | rna-NM_001182644.1_CBS6413 | cds-NP_013862.1_CBS6413 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:544725-545727:- | gene-YMR142C_CENPK1137D | rna-NM_001182644.1_CENPK1137D | cds-NP_013862.1_CENPK1137D | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005483.1:520815-521817:- | gene-YMR142C_EthanolRed | rna-NM_001182644.1_EthanolRed | cds-NP_013862.1_EthanolRed | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:527814-528816:- | gene-YMR142C_FaliES1 | rna-NM_001182644.1_FaliES1 | cds-NP_013862.1_FaliES1 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000115.1:1-653:- | gene-YMR142C_JAY291 | rna-NM_001182644.1_JAY291 | cds-NP_013862.1_JAY291 | 41.6 | 41.6 | Mismatch | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:527611-528612:- | gene-YMR142C_MUCL30387 | rna-NM_001182644.1_MUCL30387 | cds-NP_013862.1_MUCL30387 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:533143-534144:- | gene-YMR142C_MUCL30388 | rna-NM_001182644.1_MUCL30388 | cds-NP_013862.1_MUCL30388 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:523328-524330:- | gene-YMR142C_MUCL39482 | rna-NM_001182644.1_MUCL39482 | cds-NP_013862.1_MUCL39482 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:529622-530623:- | gene-YMR142C_MUCL42920 | rna-NM_001182644.1_MUCL42920 | cds-NP_013862.1_MUCL42920 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:550160-551161:- | gene-YMR142C_NCIM3186 | rna-NM_001182644.1_NCIM3186 | cds-NP_013862.1_NCIM3186 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:522966-523968:- | gene-YMR142C_NCYC1407 | rna-NM_001182644.1_NCYC1407 | cds-NP_013862.1_NCYC1407 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:533403-534404:- | gene-YMR142C_PE2H3 | rna-NM_001182644.1_PE2H3 | cds-NP_013862.1_PE2H3 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:533862-534864:- | gene-YMR142C_PE2H4 | rna-NM_001182644.1_PE2H4 | cds-NP_013862.1_PE2H4 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:550206-551207:- | gene-YMR142C_S288C | rna-NM_001182644.1_S288C | cds-NP_013862.1_S288C | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000048.1:20063-21064:+ | gene-YMR142C_SA1 | rna-NM_001182644.1_SA1 | cds-NP_013862.1_SA1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:523213-524215:- | gene-YMR142C_ThermosaccDry | rna-NM_001182644.1_ThermosaccDry | cds-NP_013862.1_ThermosaccDry | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:535916-536918:- | gene-YMR142C_VR1 | rna-NM_001182644.1_VR1 | cds-NP_013862.1_VR1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000027.1:498357-499359:- | gene-YMR142C_ZTW1 | rna-NM_001182644.1_ZTW1 | cds-NP_013862.1_ZTW1 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:534716-535711:- | gene-YMR142C_Sparadoxus | rna-NM_001182644.1_Sparadoxus | cds-NP_013862.1_Sparadoxus | 98.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |