Gene name: RPL13A
Reference locus (S288C): YDL082W
Gene biotype: protein_coding
Description: Ribosomal 60S subunit protein L13A; not essential for viability; homologous to mammalian ribosomal protein L13, no bacterial homolog; RPL13A has a paralog, RPL13B, that arose from the whole genome duplication
Top 10 interactors (score): RPS16A (0.999); RPL31A (0.999); RPL7B (0.999); RPS6B (0.999); RPS18B (0.999); RPL36A (0.999); RPL23B (0.999); RPS5 (0.999); RPL38 (0.999); RPL37A (0.999); RPS7A (0.999); RPL12B (0.999); RPS0B (0.999); RPL43B (0.999); RPL1B (0.999); RPL5 (0.999); RPS24B (0.999); RPS24A (0.999); RPL9A (0.999); RPL14A (0.999)
Homologues (species, bitscore): RPL13 (Homo sapiens, 175.6); Rpl13 (Mus musculus, 176.8); rpl13 (Danio rerio, 184.1); rpl13 (Xenopus tropicalis, 171.0); RpL13 (Drosophila melanogaster, 152.5); rpl-13 (Caenorhabditis elegans, 169.9); BBC1 (Arabidopsis thaliana, 153.7)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:293038-294002:+ | gene-YDL082W_AKU4011 | rna-NM_001180141.1_AKU4011 | cds-NP_010201.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000102.1:255945-256909:- | gene-YDL082W_BG1 | rna-NM_001180141.1_BG1 | cds-NP_010201.1_BG1 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:310707-311671:+ | gene-YDL082W_Bruggeman | rna-NM_001180141.1_Bruggeman | cds-NP_010201.1_Bruggeman | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:307197-308161:+ | gene-YDL082W_CAT1 | rna-NM_001180141.1_CAT1 | cds-NP_010201.1_CAT1 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:291310-292274:+ | gene-YDL082W_CBS1585 | rna-NM_001180141.1_CBS1585 | cds-NP_010201.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:307976-308940:+ | gene-YDL082W_CBS436 | rna-NM_001180141.1_CBS436 | cds-NP_010201.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:289737-290701:+ | gene-YDL082W_CBS6412 | rna-NM_001180141.1_CBS6412 | cds-NP_010201.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:309363-310327:+ | gene-YDL082W_CBS6413 | rna-NM_001180141.1_CBS6413 | cds-NP_010201.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:307247-308211:+ | gene-YDL082W_CENPK1137D | rna-NM_001180141.1_CENPK1137D | cds-NP_010201.1_CENPK1137D | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:304072-305036:+ | gene-YDL082W_EthanolRed | rna-NM_001180141.1_EthanolRed | cds-NP_010201.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:310044-311008:+ | gene-YDL082W_FaliES1 | rna-NM_001180141.1_FaliES1 | cds-NP_010201.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000010.1:80097-81061:+ | gene-YDL082W_JAY291 | rna-NM_001180141.1_JAY291 | cds-NP_010201.1_JAY291 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:308223-309187:+ | gene-YDL082W_MUCL30387 | rna-NM_001180141.1_MUCL30387 | cds-NP_010201.1_MUCL30387 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:299247-300211:+ | gene-YDL082W_MUCL30388 | rna-NM_001180141.1_MUCL30388 | cds-NP_010201.1_MUCL30388 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:292415-293379:+ | gene-YDL082W_MUCL39482 | rna-NM_001180141.1_MUCL39482 | cds-NP_010201.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:214424-215388:+ | gene-YDL082W_MUCL42920 | rna-NM_001180141.1_MUCL42920 | cds-NP_010201.1_MUCL42920 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:308347-309311:+ | gene-YDL082W_NCIM3186 | rna-NM_001180141.1_NCIM3186 | cds-NP_010201.1_NCIM3186 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:292429-293393:+ | gene-YDL082W_NCYC1407 | rna-NM_001180141.1_NCYC1407 | cds-NP_010201.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:299215-300179:+ | gene-YDL082W_PE2H3 | rna-NM_001180141.1_PE2H3 | cds-NP_010201.1_PE2H3 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:299212-300176:+ | gene-YDL082W_PE2H4 | rna-NM_001180141.1_PE2H4 | cds-NP_010201.1_PE2H4 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:308424-309388:+ | gene-YDL082W_S288C | rna-NM_001180141.1_S288C | cds-NP_010201.1_S288C | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000010.1:125533-126497:- | gene-YDL082W_SA1 | rna-NM_001180141.1_SA1 | cds-NP_010201.1_SA1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:309555-310519:+ | gene-YDL082W_ThermosaccDry | rna-NM_001180141.1_ThermosaccDry | cds-NP_010201.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:311631-312595:+ | gene-YDL082W_VR1 | rna-NM_001180141.1_VR1 | cds-NP_010201.1_VR1 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000006.1:307470-308434:+ | gene-YDL082W_ZTW1 | rna-NM_001180141.1_ZTW1 | cds-NP_010201.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:309576-310537:+ | gene-YDL082W_Sparadoxus | rna-NM_001180141.1_Sparadoxus | cds-NP_010201.1_Sparadoxus | 96.0 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |