Gene name: RPL12B
Reference locus (S288C): YDR418W
Gene biotype: protein_coding
Description: Ribosomal 60S subunit protein L12B; rpl12a rpl12b double mutant exhibits slow growth and slow translation; homologous to mammalian ribosomal protein L12 and bacterial L11; RPL12B has a paralog, RPL12A, that arose from the whole genome duplication
Top 10 interactors (score): RPL40B (0.999); RPL35A (0.999); RPP2B (0.999); RPL37B (0.999); RPS23A (0.999); RPL34B (0.999); RPL21B (0.999); RPS4A (0.999); RPL13B (0.999); RPS8A (0.999); RPL33B (0.999); RPS16B (0.999); RPS10A (0.999); RPS11A (0.999); RPL19A (0.999); RPS12 (0.999); RPS4B (0.999); RPL30 (0.999); TMA19 (0.999); RPL4B (0.999)
Homologues (species, bitscore): RPL12 (Homo sapiens, 249.2); Gm9396 (Mus musculus, 250.0); rpl12 (Danio rerio, 237.7); rpl12 (Xenopus tropicalis, 245.7); RpL12 (Drosophila melanogaster, 242.7); rpl-12 (Caenorhabditis elegans, 233.4); AT2G37190 (Arabidopsis thaliana, 216.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:1241750-1242247:+ | gene-YDR418W_AKU4011 | rna-NM_001180726.3_AKU4011 | cds-NP_010706.3_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000039.1:120255-120752:+ | gene-YDR418W_BG1 | rna-NM_001180726.3_BG1 | cds-NP_010706.3_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:1272650-1273147:+ | gene-YDR418W_Bruggeman | rna-NM_001180726.3_Bruggeman | cds-NP_010706.3_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:1251210-1251707:+ | gene-YDR418W_CAT1 | rna-NM_001180726.3_CAT1 | cds-NP_010706.3_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:1236670-1237167:+ | gene-YDR418W_CBS1585 | rna-NM_001180726.3_CBS1585 | cds-NP_010706.3_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:1255548-1256045:+ | gene-YDR418W_CBS436 | rna-NM_001180726.3_CBS436 | cds-NP_010706.3_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:1232724-1233221:+ | gene-YDR418W_CBS6412 | rna-NM_001180726.3_CBS6412 | cds-NP_010706.3_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:1254579-1255076:+ | gene-YDR418W_CBS6413 | rna-NM_001180726.3_CBS6413 | cds-NP_010706.3_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:1300275-1300772:+ | gene-YDR418W_CENPK1137D | rna-NM_001180726.3_CENPK1137D | cds-NP_010706.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:1246138-1246635:+ | gene-YDR418W_EthanolRed | rna-NM_001180726.3_EthanolRed | cds-NP_010706.3_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:1249445-1249942:+ | gene-YDR418W_FaliES1 | rna-NM_001180726.3_FaliES1 | cds-NP_010706.3_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000181.1:5549-6046:- | gene-YDR418W_JAY291 | rna-NM_001180726.3_JAY291 | cds-NP_010706.3_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:1256212-1256709:+ | gene-YDR418W_MUCL30387 | rna-NM_001180726.3_MUCL30387 | cds-NP_010706.3_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:1238318-1238815:+ | gene-YDR418W_MUCL30388 | rna-NM_001180726.3_MUCL30388 | cds-NP_010706.3_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:1227998-1228495:+ | gene-YDR418W_MUCL39482 | rna-NM_001180726.3_MUCL39482 | cds-NP_010706.3_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:1170448-1170945:+ | gene-YDR418W_MUCL42920 | rna-NM_001180726.3_MUCL42920 | cds-NP_010706.3_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:1301539-1302036:+ | gene-YDR418W_NCIM3186 | rna-NM_001180726.3_NCIM3186 | cds-NP_010706.3_NCIM3186 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:1241970-1242467:+ | gene-YDR418W_NCYC1407 | rna-NM_001180726.3_NCYC1407 | cds-NP_010706.3_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:1252124-1252621:+ | gene-YDR418W_PE2H3 | rna-NM_001180726.3_PE2H3 | cds-NP_010706.3_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:1257692-1258189:+ | gene-YDR418W_PE2H4 | rna-NM_001180726.3_PE2H4 | cds-NP_010706.3_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:1301616-1302113:+ | gene-YDR418W_S288C | rna-NM_001180726.3_S288C | cds-NP_010706.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000071.1:5674-6171:- | gene-YDR418W_SA1 | rna-NM_001180726.3_SA1 | cds-NP_010706.3_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:1253707-1254204:+ | gene-YDR418W_ThermosaccDry | rna-NM_001180726.3_ThermosaccDry | cds-NP_010706.3_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:1268928-1269425:+ | gene-YDR418W_VR1 | rna-NM_001180726.3_VR1 | cds-NP_010706.3_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000008.1:296519-297016:+ | gene-YDR418W_ZTW1 | rna-NM_001180726.3_ZTW1 | cds-NP_010706.3_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:1248937-1249434:+ | gene-YDR418W_Sparadoxus | rna-NM_001180726.3_Sparadoxus | cds-NP_010706.3_Sparadoxus | 96.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |