Gene name: RPL12A
Reference locus (S288C): YEL054C
Gene biotype: protein_coding
Description: Ribosomal 60S subunit protein L12A; rpl12a rpl12b double mutant exhibits slow growth and slow translation; homologous to mammalian ribosomal protein L12 and bacterial L11; RPL12A has a paralog, RPL12B, that arose from the whole genome duplication
Top 10 interactors (score): RPS23A (0.999); RPL21B (0.999); RPS4A (0.999); RPS16B (0.999); RPL13A (0.999); RPL27B (0.999); RPL1A (0.999); RPL15A (0.999); RPL16A (0.999); RPS18A (0.999); RPL6A (0.999); RPL4B (0.999); RPS4B (0.999); RPL30 (0.999); RPS11A (0.999); RPS10A (0.999); RPL19A (0.999); RPS12 (0.999); RPS8A (0.999); RPL13B (0.999)
Homologues (species, bitscore): RPL12 (Homo sapiens, 249.2); Gm9396 (Mus musculus, 250.0); rpl12 (Danio rerio, 237.7); rpl12 (Xenopus tropicalis, 245.7); RpL12 (Drosophila melanogaster, 242.7); rpl-12 (Caenorhabditis elegans, 233.4); AT2G37190 (Arabidopsis thaliana, 216.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005299.1:47126-47623:- | gene-YEL054C_AKU4011 | rna-NM_001178869.1_AKU4011 | cds-NP_010860.1_AKU4011 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000075.1:32893-33390:+ | gene-YEL054C_BG1 | rna-NM_001178869.1_BG1 | cds-NP_010860.1_BG1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005507.1:50645-51142:- | gene-YEL054C_Bruggeman | rna-NM_001178869.1_Bruggeman | cds-NP_010860.1_Bruggeman | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005523.1:49068-49565:- | gene-YEL054C_CAT1 | rna-NM_001178869.1_CAT1 | cds-NP_010860.1_CAT1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005363.1:47073-47570:- | gene-YEL054C_CBS1585 | rna-NM_001178869.1_CBS1585 | cds-NP_010860.1_CBS1585 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005347.1:48131-48628:- | gene-YEL054C_CBS436 | rna-NM_001178869.1_CBS436 | cds-NP_010860.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005331.1:47323-47820:- | gene-YEL054C_CBS6412 | rna-NM_001178869.1_CBS6412 | cds-NP_010860.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005315.1:51967-52464:- | gene-YEL054C_CBS6413 | rna-NM_001178869.1_CBS6413 | cds-NP_010860.1_CBS6413 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001526.1:50561-51058:- | gene-YEL054C_CENPK1137D | rna-NM_001178869.1_CENPK1137D | cds-NP_010860.1_CENPK1137D | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005475.1:46883-47380:- | gene-YEL054C_EthanolRed | rna-NM_001178869.1_EthanolRed | cds-NP_010860.1_EthanolRed | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005539.1:47146-47643:- | gene-YEL054C_FaliES1 | rna-NM_001178869.1_FaliES1 | cds-NP_010860.1_FaliES1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000427.1:10412-10909:+ | gene-YEL054C_JAY291 | rna-NM_001178869.1_JAY291 | cds-NP_010860.1_JAY291 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005411.1:51077-51574:- | gene-YEL054C_MUCL30387 | rna-NM_001178869.1_MUCL30387 | cds-NP_010860.1_MUCL30387 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005443.1:47194-47691:- | gene-YEL054C_MUCL30388 | rna-NM_001178869.1_MUCL30388 | cds-NP_010860.1_MUCL30388 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005283.1:46440-46937:- | gene-YEL054C_MUCL39482 | rna-NM_001178869.1_MUCL39482 | cds-NP_010860.1_MUCL39482 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005427.1:51079-51576:- | gene-YEL054C_MUCL42920 | rna-NM_001178869.1_MUCL42920 | cds-NP_010860.1_MUCL42920 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011814.1:52720-53217:- | gene-YEL054C_NCIM3186 | rna-NM_001178869.1_NCIM3186 | cds-NP_010860.1_NCIM3186 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005267.1:51535-52032:- | gene-YEL054C_NCYC1407 | rna-NM_001178869.1_NCYC1407 | cds-NP_010860.1_NCYC1407 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994144.1:55547-56044:- | gene-YEL054C_PE2H3 | rna-NM_001178869.1_PE2H3 | cds-NP_010860.1_PE2H3 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999876.1:51463-51960:- | gene-YEL054C_PE2H4 | rna-NM_001178869.1_PE2H4 | cds-NP_010860.1_PE2H4 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001137.3:52721-53218:- | gene-YEL054C_S288C | rna-NM_001178869.1_S288C | cds-NP_010860.1_S288C | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000053.1:33781-34278:+ | gene-YEL054C_SA1 | rna-NM_001178869.1_SA1 | cds-NP_010860.1_SA1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005491.1:47546-48043:- | gene-YEL054C_ThermosaccDry | rna-NM_001178869.1_ThermosaccDry | cds-NP_010860.1_ThermosaccDry | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005459.1:46754-47251:- | gene-YEL054C_VR1 | rna-NM_001178869.1_VR1 | cds-NP_010860.1_VR1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000009.1:46482-46979:- | gene-YEL054C_ZTW1 | rna-NM_001178869.1_ZTW1 | cds-NP_010860.1_ZTW1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047491.1:50736-51233:- | gene-YEL054C_Sparadoxus | rna-NM_001178869.1_Sparadoxus | cds-NP_010860.1_Sparadoxus | 96.5 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |