Gene name: RPL11B
Reference locus (S288C): YGR085C
Gene biotype: protein_coding
Description: Ribosomal 60S subunit protein L11B; expressed at half the level of Rpl11Ap; involved in ribosomal assembly; depletion causes degradation of 60S proteins and RNA; homologous to mammalian ribosomal protein L11 and bacterial L5; RPL11B has a paralog, RPL11A, that arose from the whole genome duplication
Top 10 interactors (score): RPS8A (0.999); RPL13B (0.999); RPL33B (0.999); RPS16B (0.999); RPL19A (0.999); RPS12 (0.999); RPS11A (0.999); RPS10A (0.999); RPS4B (0.999); RPL30 (0.999); RPL4B (0.999); RPS23A (0.999); RPL34B (0.999); RPS10B (0.999); RPL21B (0.999); RPS4A (0.999); RPS3 (0.999); RPS2 (0.999); RPL20A (0.999); RPL35A (0.999)
Homologues (species, bitscore): RPL11 (Homo sapiens, 261.2); Rpl11 (Mus musculus, 261.2); rpl11 (Danio rerio, 261.9); rpl11 (Xenopus tropicalis, 262.3); RpL11 (Drosophila melanogaster, 272.3); rpl-11.1 (Caenorhabditis elegans, 269.6); RPL16A (Arabidopsis thaliana, 268.5)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:632059-632573:- | gene-YGR085C_AKU4011 | rna-NM_001181214.1_AKU4011 | cds-NP_011599.1_AKU4011 | 77.2 | 92.3 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000173.1:68359-68883:- | gene-YGR085C_BG1 | rna-NM_001181214.1_BG1 | cds-NP_011599.1_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:634335-635021:- | gene-YGR085C_Bruggeman | rna-NM_001181214.1_Bruggeman | cds-NP_011599.1_Bruggeman | 76.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:632772-633464:- | gene-YGR085C_CAT1 | rna-NM_001181214.1_CAT1 | cds-NP_011599.1_CAT1 | 75.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:633352-634044:- | gene-YGR085C_CBS1585 | rna-NM_001181214.1_CBS1585 | cds-NP_011599.1_CBS1585 | 75.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:634690-635204:- | gene-YGR085C_CBS436 | rna-NM_001181214.1_CBS436 | cds-NP_011599.1_CBS436 | 77.2 | 92.3 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:625213-625737:- | gene-YGR085C_CBS6412 | rna-NM_001181214.1_CBS6412 | cds-NP_011599.1_CBS6412 | 68.0 | 100.0 | Mismatch | 1 | 1 | 0 | False | False | False | True | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:629988-630680:- | gene-YGR085C_CBS6413 | rna-NM_001181214.1_CBS6413 | cds-NP_011599.1_CBS6413 | 75.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:648055-648579:- | gene-YGR085C_CENPK1137D | rna-NM_001181214.1_CENPK1137D | cds-NP_011599.1_CENPK1137D | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:620105-620624:- | gene-YGR085C_EthanolRed | rna-NM_001181214.1_EthanolRed | cds-NP_011599.1_EthanolRed | 76.0 | 89.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:623779-624471:- | gene-YGR085C_FaliES1 | rna-NM_001181214.1_FaliES1 | cds-NP_011599.1_FaliES1 | 75.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:631044-631730:- | gene-YGR085C_MUCL30387 | rna-NM_001181214.1_MUCL30387 | cds-NP_011599.1_MUCL30387 | 76.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:634379-635071:- | gene-YGR085C_MUCL30388 | rna-NM_001181214.1_MUCL30388 | cds-NP_011599.1_MUCL30388 | 75.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:629248-629772:- | gene-YGR085C_MUCL39482 | rna-NM_001181214.1_MUCL39482 | cds-NP_011599.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:639012-639618:- | gene-YGR085C_MUCL42920 | rna-NM_001181214.1_MUCL42920 | cds-NP_011599.1_MUCL42920 | 86.3 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:648383-648907:- | gene-YGR085C_NCIM3186 | rna-NM_001181214.1_NCIM3186 | cds-NP_011599.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:623439-623953:- | gene-YGR085C_NCYC1407 | rna-NM_001181214.1_NCYC1407 | cds-NP_011599.1_NCYC1407 | 77.2 | 92.3 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:626629-627153:- | gene-YGR085C_PE2H3 | rna-NM_001181214.1_PE2H3 | cds-NP_011599.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:631749-632273:- | gene-YGR085C_PE2H4 | rna-NM_001181214.1_PE2H4 | cds-NP_011599.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:648383-648907:- | gene-YGR085C_S288C | rna-NM_001181214.1_S288C | cds-NP_011599.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000015.1:74953-75477:- | gene-YGR085C_SA1 | rna-NM_001181214.1_SA1 | cds-NP_011599.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:643123-643637:- | gene-YGR085C_ThermosaccDry | rna-NM_001181214.1_ThermosaccDry | cds-NP_011599.1_ThermosaccDry | 77.2 | 92.3 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | MBVZ01000165.1:121-453:+ | gene-YGR085C_VR1 | rna-NM_001181214.1_VR1 | cds-NP_011599.1_VR1 | 63.4 | 63.4 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000015.1:98574-99098:- | gene-YGR085C_ZTW1 | rna-NM_001181214.1_ZTW1 | cds-NP_011599.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:633667-634191:- | gene-YGR085C_Sparadoxus | rna-NM_001181214.1_Sparadoxus | cds-NP_011599.1_Sparadoxus | 92.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |