Gene name: RPL11A
Reference locus (S288C): YPR102C
Gene biotype: protein_coding
Description: Ribosomal 60S subunit protein L11A; expressed at twice the level of Rpl11Bp; involved in ribosomal assembly; depletion causes degradation of 60S proteins and RNA; homologous to mammalian ribosomal protein L11 and bacterial L5; RPL11A has a paralog, RPL11B, that arose from the whole genome duplication
Top 10 interactors (score): RPL12A (0.999); RPL37B (0.999); RPS3 (0.999); RPS2 (0.999); RPL20A (0.999); TMA19 (0.999); RPL30 (0.999); RPL4B (0.999); RPL35A (0.999); RPL6A (0.999); RPL15A (0.999); RPL16A (0.999); RPS18A (0.999); RPS14B (0.999); RPL27B (0.999); RPL13A (0.999); RPL1A (0.999); RPL8B (0.999); RPL40B (0.999); RPL9B (0.999)
Homologues (species, bitscore): RPL11 (Homo sapiens, 261.2); Rpl11 (Mus musculus, 261.2); rpl11 (Danio rerio, 261.9); rpl11 (Xenopus tropicalis, 262.3); RpL11 (Drosophila melanogaster, 272.3); rpl-11.1 (Caenorhabditis elegans, 269.6); RPL16A (Arabidopsis thaliana, 268.5)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:702892-703584:- | gene-YPR102C_AKU4011 | rna-NM_001184199.1_AKU4011 | cds-NP_015427.1_AKU4011 | 75.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000091.1:194259-194783:+ | gene-YPR102C_BG1 | rna-NM_001184199.1_BG1 | cds-NP_015427.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:780571-781099:- | gene-YPR102C_Bruggeman | rna-NM_001184199.1_Bruggeman | cds-NP_015427.1_Bruggeman | 75.5 | 91.8 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:824871-825399:- | gene-YPR102C_CAT1 | rna-NM_001184199.1_CAT1 | cds-NP_015427.1_CAT1 | 75.5 | 91.8 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:706819-707347:- | gene-YPR102C_CBS1585 | rna-NM_001184199.1_CBS1585 | cds-NP_015427.1_CBS1585 | 75.5 | 91.8 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:721449-722135:- | gene-YPR102C_CBS436 | rna-NM_001184199.1_CBS436 | cds-NP_015427.1_CBS436 | 76.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:709954-710459:- | gene-YPR102C_CBS6412 | rna-NM_001184199.1_CBS6412 | cds-NP_015427.1_CBS6412 | 77.3 | 90.2 | Unannotated | 1 | 1 | 0 | False | False | True | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:703776-704304:- | gene-YPR102C_CBS6413 | rna-NM_001184199.1_CBS6413 | cds-NP_015427.1_CBS6413 | 75.5 | 91.8 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:1029890-1030351:- | gene-YPR102C_EthanolRed | rna-NM_001184199.1_EthanolRed | cds-NP_015427.1_EthanolRed | 76.7 | 84.5 | Unannotated | 1 | 1 | 0 | False | False | True | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:708723-709251:- | gene-YPR102C_FaliES1 | rna-NM_001184199.1_FaliES1 | cds-NP_015427.1_FaliES1 | 75.5 | 91.8 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000436.1:1-503:- | gene-YPR102C_JAY291 | rna-NM_001184199.1_JAY291 | cds-NP_015427.1_JAY291 | 95.6 | 95.8 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:721829-722357:- | gene-YPR102C_MUCL30387 | rna-NM_001184199.1_MUCL30387 | cds-NP_015427.1_MUCL30387 | 75.5 | 91.8 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:720519-721047:- | gene-YPR102C_MUCL30388 | rna-NM_001184199.1_MUCL30388 | cds-NP_015427.1_MUCL30388 | 75.5 | 91.8 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:699824-700348:- | gene-YPR102C_MUCL39482 | rna-NM_001184199.1_MUCL39482 | cds-NP_015427.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:762670-763443:- | gene-YPR102C_MUCL42920 | rna-NM_001184199.1_MUCL42920 | cds-NP_015427.1_MUCL42920 | 67.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:731207-731731:- | gene-YPR102C_NCIM3186 | rna-NM_001184199.1_NCIM3186 | cds-NP_015427.1_NCIM3186 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:708250-708942:- | gene-YPR102C_NCYC1407 | rna-NM_001184199.1_NCYC1407 | cds-NP_015427.1_NCYC1407 | 75.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:714654-715178:- | gene-YPR102C_PE2H3 | rna-NM_001184199.1_PE2H3 | cds-NP_015427.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:714302-714826:- | gene-YPR102C_PE2H4 | rna-NM_001184199.1_PE2H4 | cds-NP_015427.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:731224-731748:- | gene-YPR102C_S288C | rna-NM_001184199.1_S288C | cds-NP_015427.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000028.1:29342-29866:- | gene-YPR102C_SA1 | rna-NM_001184199.1_SA1 | cds-NP_015427.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:708498-709190:- | gene-YPR102C_ThermosaccDry | rna-NM_001184199.1_ThermosaccDry | cds-NP_015427.1_ThermosaccDry | 75.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:725153-725845:- | gene-YPR102C_VR1 | rna-NM_001184199.1_VR1 | cds-NP_015427.1_VR1 | 75.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:707717-708241:- | gene-YPR102C_ZTW1 | rna-NM_001184199.1_ZTW1 | cds-NP_015427.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:708680-709204:- | gene-YPR102C_Sparadoxus | rna-NM_001184199.1_Sparadoxus | cds-NP_015427.1_Sparadoxus | 97.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |