Gene name: RPG1
Reference locus (S288C): YBR079C
Gene biotype: protein_coding
Description: eIF3a subunit of the eukaryotic translation initiation factor 3 (eIF3); subunit of the core complex of eIF3; essential for translation; part of a Prt1p-Rpg1p-Nip1p subcomplex that stimulates binding of mRNA and tRNA(i)Met to ribosomes; involved in translation reinitiation; eIF3 is also involved in programmed stop codon readthrough
Top 10 interactors (score): HCR1 (0.999); PRT1 (0.999); TIF34 (0.999); FUN12 (0.999); TIF3 (0.999); RPS0A (0.999); TIF11 (0.999); GCD11 (0.999); SUI3 (0.999); RPS20 (0.999); SUI1 (0.999); TIF35 (0.999); NIP1 (0.999); TIF5 (0.999); SUI2 (0.999); RLI1 (0.999); RPS3 (0.998); RPS2 (0.998); ASC1 (0.997); TIF4631 (0.997)
Homologues (species, bitscore): EIF3A (Homo sapiens, 305.8); Eif3a (Mus musculus, 310.8); eif3s10 (Danio rerio, 306.2); eif3a (Xenopus tropicalis, 261.9); eIF3-S10 (Drosophila melanogaster, 290.4); egl-45 (Caenorhabditis elegans, 234.2); EIF3A (Arabidopsis thaliana, 325.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:377767-380652:- | gene-YBR079C_AKU4011 | rna-NM_001178427.1_AKU4011 | cds-NP_009635.1_AKU4011 | 99.4 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000179.1:368747-371641:- | gene-YBR079C_BG1 | rna-NM_001178427.1_BG1 | cds-NP_009635.1_BG1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005504.1:379003-381888:- | gene-YBR079C_Bruggeman | rna-NM_001178427.1_Bruggeman | cds-NP_009635.1_Bruggeman | 99.4 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005520.1:382313-385207:- | gene-YBR079C_CAT1 | rna-NM_001178427.1_CAT1 | cds-NP_009635.1_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:370051-372936:- | gene-YBR079C_CBS1585 | rna-NM_001178427.1_CBS1585 | cds-NP_009635.1_CBS1585 | 99.4 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:378142-381045:- | gene-YBR079C_CBS436 | rna-NM_001178427.1_CBS436 | cds-NP_009635.1_CBS436 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:468281-471166:- | gene-YBR079C_CBS6412 | rna-NM_001178427.1_CBS6412 | cds-NP_009635.1_CBS6412 | 99.4 | 99.6 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:375191-378076:- | gene-YBR079C_CBS6413 | rna-NM_001178427.1_CBS6413 | cds-NP_009635.1_CBS6413 | 99.4 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:389141-392035:- | gene-YBR079C_CENPK1137D | rna-NM_001178427.1_CENPK1137D | cds-NP_009635.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:504558-507443:- | gene-YBR079C_EthanolRed | rna-NM_001178427.1_EthanolRed | cds-NP_009635.1_EthanolRed | 99.4 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:393841-396726:- | gene-YBR079C_FaliES1 | rna-NM_001178427.1_FaliES1 | cds-NP_009635.1_FaliES1 | 99.4 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000124.1:41768-44653:- | gene-YBR079C_JAY291 | rna-NM_001178427.1_JAY291 | cds-NP_009635.1_JAY291 | 99.4 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:380157-383042:- | gene-YBR079C_MUCL30387 | rna-NM_001178427.1_MUCL30387 | cds-NP_009635.1_MUCL30387 | 99.3 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:380196-383072:- | gene-YBR079C_MUCL30388 | rna-NM_001178427.1_MUCL30388 | cds-NP_009635.1_MUCL30388 | 99.1 | 99.3 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:370043-372928:- | gene-YBR079C_MUCL39482 | rna-NM_001178427.1_MUCL39482 | cds-NP_009635.1_MUCL39482 | 99.4 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:377257-380142:- | gene-YBR079C_MUCL42920 | rna-NM_001178427.1_MUCL42920 | cds-NP_009635.1_MUCL42920 | 99.4 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:395180-398074:- | gene-YBR079C_NCIM3186 | rna-NM_001178427.1_NCIM3186 | cds-NP_009635.1_NCIM3186 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:370975-373860:- | gene-YBR079C_NCYC1407 | rna-NM_001178427.1_NCYC1407 | cds-NP_009635.1_NCYC1407 | 99.4 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:383218-386103:- | gene-YBR079C_PE2H3 | rna-NM_001178427.1_PE2H3 | cds-NP_009635.1_PE2H3 | 99.4 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:380894-383779:- | gene-YBR079C_PE2H4 | rna-NM_001178427.1_PE2H4 | cds-NP_009635.1_PE2H4 | 99.4 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:395383-398277:- | gene-YBR079C_S288C | rna-NM_001178427.1_S288C | cds-NP_009635.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000017.1:79241-82126:+ | gene-YBR079C_SA1 | rna-NM_001178427.1_SA1 | cds-NP_009635.1_SA1 | 99.4 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:392848-395733:- | gene-YBR079C_ThermosaccDry | rna-NM_001178427.1_ThermosaccDry | cds-NP_009635.1_ThermosaccDry | 99.4 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:374836-377721:- | gene-YBR079C_VR1 | rna-NM_001178427.1_VR1 | cds-NP_009635.1_VR1 | 99.3 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:368517-371402:- | gene-YBR079C_ZTW1 | rna-NM_001178427.1_ZTW1 | cds-NP_009635.1_ZTW1 | 99.4 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:405454-408321:- | gene-YBR079C_Sparadoxus | rna-NM_001178427.1_Sparadoxus | cds-NP_009635.1_Sparadoxus | 90.7 | 99.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |