Gene name: RPF2
Reference locus (S288C): YKR081C
Gene biotype: protein_coding
Description: Ribosome biogenesis protein RPF2; Essential protein involved in rRNA maturation and ribosomal assembly; involved in the processing of pre-rRNA and the assembly of the 60S ribosomal subunit; interacts with ribosomal protein L11; localizes predominantly to the nucleolus; constituent of 66S pre-ribosomal particles
Top 10 interactors (score): CGR1 (0.999); NOC3 (0.999); NOP12 (0.999); MRT4 (0.999); MAK11 (0.999); SPB1 (0.999); YTM1 (0.999); NOP2 (0.999); RRS1 (0.999); RPF1 (0.999); NOP15 (0.999); HAS1 (0.999); NSA2 (0.999); NOG2 (0.999); IMP4 (0.999); RLP24 (0.999); DRS1 (0.999); RRP1 (0.999); NSA1 (0.999); RPL5 (0.999)
Homologues (species, bitscore): RPF2 (Homo sapiens, 233.4); Rpf2 (Mus musculus, 194.9); rpf2 (Danio rerio, 228.0); rpf2 (Xenopus tropicalis, 231.1); Non3 (Drosophila melanogaster, 222.2); Y54E10A.10 (Caenorhabditis elegans, 183.0); AT3G23620 (Arabidopsis thaliana, 154.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005305.1:577536-578570:- | gene-YKR081C_AKU4011 | rna-NM_001179871.1_AKU4011 | cds-NP_013007.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000113.1:65655-66689:+ | gene-YKR081C_BG1 | rna-NM_001179871.1_BG1 | cds-NP_013007.1_BG1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005513.1:600114-601148:- | gene-YKR081C_Bruggeman | rna-NM_001179871.1_Bruggeman | cds-NP_013007.1_Bruggeman | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005529.1:596035-597069:- | gene-YKR081C_CAT1 | rna-NM_001179871.1_CAT1 | cds-NP_013007.1_CAT1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005369.1:590023-591057:- | gene-YKR081C_CBS1585 | rna-NM_001179871.1_CBS1585 | cds-NP_013007.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005353.1:588408-589442:- | gene-YKR081C_CBS436 | rna-NM_001179871.1_CBS436 | cds-NP_013007.1_CBS436 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005337.1:573311-574345:- | gene-YKR081C_CBS6412 | rna-NM_001179871.1_CBS6412 | cds-NP_013007.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005321.1:589841-590875:- | gene-YKR081C_CBS6413 | rna-NM_001179871.1_CBS6413 | cds-NP_013007.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001532.1:591161-592195:- | gene-YKR081C_CENPK1137D | rna-NM_001179871.1_CENPK1137D | cds-NP_013007.1_CENPK1137D | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005481.1:587348-588382:- | gene-YKR081C_EthanolRed | rna-NM_001179871.1_EthanolRed | cds-NP_013007.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005545.1:591243-592277:- | gene-YKR081C_FaliES1 | rna-NM_001179871.1_FaliES1 | cds-NP_013007.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000426.1:52657-53691:+ | gene-YKR081C_JAY291 | rna-NM_001179871.1_JAY291 | cds-NP_013007.1_JAY291 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005417.1:599610-600644:- | gene-YKR081C_MUCL30387 | rna-NM_001179871.1_MUCL30387 | cds-NP_013007.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005449.1:593953-594987:- | gene-YKR081C_MUCL30388 | rna-NM_001179871.1_MUCL30388 | cds-NP_013007.1_MUCL30388 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005289.1:588864-589898:- | gene-YKR081C_MUCL39482 | rna-NM_001179871.1_MUCL39482 | cds-NP_013007.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005433.1:594887-595921:- | gene-YKR081C_MUCL42920 | rna-NM_001179871.1_MUCL42920 | cds-NP_013007.1_MUCL42920 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011820.1:591495-592529:- | gene-YKR081C_NCIM3186 | rna-NM_001179871.1_NCIM3186 | cds-NP_013007.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005273.1:589276-590310:- | gene-YKR081C_NCYC1407 | rna-NM_001179871.1_NCYC1407 | cds-NP_013007.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994150.1:614442-615515:- | gene-YKR081C_PE2H3 | rna-NM_001179871.1_PE2H3 | cds-NP_013007.1_PE2H3 | 95.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999882.1:598846-599919:- | gene-YKR081C_PE2H4 | rna-NM_001179871.1_PE2H4 | cds-NP_013007.1_PE2H4 | 95.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001143.9:591506-592540:- | gene-YKR081C_S288C | rna-NM_001179871.1_S288C | cds-NP_013007.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000029.1:89309-90343:+ | gene-YKR081C_SA1 | rna-NM_001179871.1_SA1 | cds-NP_013007.1_SA1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005497.1:590490-591524:- | gene-YKR081C_ThermosaccDry | rna-NM_001179871.1_ThermosaccDry | cds-NP_013007.1_ThermosaccDry | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005465.1:589752-590786:- | gene-YKR081C_VR1 | rna-NM_001179871.1_VR1 | cds-NP_013007.1_VR1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000022.1:587471-588505:- | gene-YKR081C_ZTW1 | rna-NM_001179871.1_ZTW1 | cds-NP_013007.1_ZTW1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047497.1:612721-613755:- | gene-YKR081C_Sparadoxus | rna-NM_001179871.1_Sparadoxus | cds-NP_013007.1_Sparadoxus | 93.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |