Gene name: RPF1
Reference locus (S288C): YHR088W
Gene biotype: protein_coding
Description: Ribosome production factor 1; Protein involved in assembly and export of the large ribosomal subunit; nucleolar protein; constituent of 66S pre-ribosomal particles; contains a sigma(70)-like motif, which is thought to bind RNA
Top 10 interactors (score): RRP15 (0.999); RPF2 (0.999); NOP2 (0.999); MRT4 (0.999); ERB1 (0.999); NUG1 (0.999); EBP2 (0.999); SSF1 (0.999); NOP7 (0.999); NIP7 (0.999); NOC2 (0.999); MAK16 (0.999); BRX1 (0.999); PUF6 (0.999); RLP7 (0.999); CIC1 (0.999); NOG1 (0.999); NOP4 (0.999); NMD3 (0.999); DBP10 (0.999)
Homologues (species, bitscore): RPF1 (Homo sapiens, 243.8); Rpf1 (Mus musculus, 243.0); rpf1 (Danio rerio, 235.7); rpf1 (Xenopus tropicalis, 250.4); CG6712 (Drosophila melanogaster, 174.9); F44G4.1 (Caenorhabditis elegans, 203.0); MEE49 (Arabidopsis thaliana, 223.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005302.1:267905-268792:+ | gene-YHR088W_AKU4011 | rna-NM_001179218.1_AKU4011 | cds-NP_011956.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000053.1:188252-189139:+ | gene-YHR088W_BG1 | rna-NM_001179218.1_BG1 | cds-NP_011956.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005510.1:275732-276619:+ | gene-YHR088W_Bruggeman | rna-NM_001179218.1_Bruggeman | cds-NP_011956.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005526.1:270872-271759:+ | gene-YHR088W_CAT1 | rna-NM_001179218.1_CAT1 | cds-NP_011956.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005366.1:266947-267834:+ | gene-YHR088W_CBS1585 | rna-NM_001179218.1_CBS1585 | cds-NP_011956.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005350.1:264810-265697:+ | gene-YHR088W_CBS436 | rna-NM_001179218.1_CBS436 | cds-NP_011956.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005334.1:270295-271182:+ | gene-YHR088W_CBS6412 | rna-NM_001179218.1_CBS6412 | cds-NP_011956.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005318.1:267986-268873:+ | gene-YHR088W_CBS6413 | rna-NM_001179218.1_CBS6413 | cds-NP_011956.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001529.1:274663-275550:+ | gene-YHR088W_CENPK1137D | rna-NM_001179218.1_CENPK1137D | cds-NP_011956.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005478.1:327511-328398:+ | gene-YHR088W_EthanolRed | rna-NM_001179218.1_EthanolRed | cds-NP_011956.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005542.1:268315-269202:+ | gene-YHR088W_FaliES1 | rna-NM_001179218.1_FaliES1 | cds-NP_011956.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000394.1:51039-51926:+ | gene-YHR088W_JAY291 | rna-NM_001179218.1_JAY291 | cds-NP_011956.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005414.1:275253-276140:+ | gene-YHR088W_MUCL30387 | rna-NM_001179218.1_MUCL30387 | cds-NP_011956.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005446.1:275115-276002:+ | gene-YHR088W_MUCL30388 | rna-NM_001179218.1_MUCL30388 | cds-NP_011956.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005286.1:267270-268157:+ | gene-YHR088W_MUCL39482 | rna-NM_001179218.1_MUCL39482 | cds-NP_011956.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005430.1:274018-274905:+ | gene-YHR088W_MUCL42920 | rna-NM_001179218.1_MUCL42920 | cds-NP_011956.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011817.1:281377-282264:+ | gene-YHR088W_NCIM3186 | rna-NM_001179218.1_NCIM3186 | cds-NP_011956.1_NCIM3186 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005270.1:269735-270622:+ | gene-YHR088W_NCYC1407 | rna-NM_001179218.1_NCYC1407 | cds-NP_011956.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994147.1:269404-270291:+ | gene-YHR088W_PE2H3 | rna-NM_001179218.1_PE2H3 | cds-NP_011956.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999879.1:276851-277738:+ | gene-YHR088W_PE2H4 | rna-NM_001179218.1_PE2H4 | cds-NP_011956.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001140.6:281495-282382:+ | gene-YHR088W_S288C | rna-NM_001179218.1_S288C | cds-NP_011956.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000014.1:76606-77493:- | gene-YHR088W_SA1 | rna-NM_001179218.1_SA1 | cds-NP_011956.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005494.1:269406-270293:+ | gene-YHR088W_ThermosaccDry | rna-NM_001179218.1_ThermosaccDry | cds-NP_011956.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005462.1:277280-278167:+ | gene-YHR088W_VR1 | rna-NM_001179218.1_VR1 | cds-NP_011956.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000017.1:260961-261848:+ | gene-YHR088W_ZTW1 | rna-NM_001179218.1_ZTW1 | cds-NP_011956.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047494.1:266696-267583:+ | gene-YHR088W_Sparadoxus | rna-NM_001179218.1_Sparadoxus | cds-NP_011956.1_Sparadoxus | 92.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |