Gene name: RPE1
Reference locus (S288C): YJL121C
Gene biotype: protein_coding
Description: D-ribulose-5-phosphate 3-epimerase; catalyzes a reaction in the non-oxidative part of the pentose-phosphate pathway; mutants are sensitive to oxidative stress
Top 10 interactors (score): RKI1 (0.999); TKL1 (0.999); XKS1 (0.999); TAL1 (0.999); TKL2 (0.999); GND1 (0.999); ZWF1 (0.998); GND2 (0.998); NQM1 (0.998); TPI1 (0.917); PGI1 (0.902); GRE3 (0.902); PGK1 (0.896); XYL2 (0.887); FBP1 (0.836); PHO13 (0.832); SOL3 (0.822); FBA1 (0.786); GAL10 (0.764); SHB17 (0.762)
Homologues (species, bitscore): RPE (Homo sapiens, 262.3); Rpe (Mus musculus, 260.4); rpe (Danio rerio, 258.5); rpe (Xenopus tropicalis, 219.5); Rpe (Drosophila melanogaster, 225.3); F08F8.7 (Caenorhabditis elegans, 246.1); AT3G01850 (Arabidopsis thaliana, 248.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005304.1:178694-179410:- | gene-YJL121C_AKU4011 | rna-NM_001181554.1_AKU4011 | cds-NP_012414.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000190.1:434327-435043:+ | gene-YJL121C_BG1 | rna-NM_001181554.1_BG1 | cds-NP_012414.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005512.1:190742-191458:- | gene-YJL121C_Bruggeman | rna-NM_001181554.1_Bruggeman | cds-NP_012414.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005528.1:194552-195268:- | gene-YJL121C_CAT1 | rna-NM_001181554.1_CAT1 | cds-NP_012414.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005368.1:184328-185044:- | gene-YJL121C_CBS1585 | rna-NM_001181554.1_CBS1585 | cds-NP_012414.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005352.1:209067-209783:- | gene-YJL121C_CBS436 | rna-NM_001181554.1_CBS436 | cds-NP_012414.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005336.1:180348-181064:- | gene-YJL121C_CBS6412 | rna-NM_001181554.1_CBS6412 | cds-NP_012414.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005320.1:181803-182519:- | gene-YJL121C_CBS6413 | rna-NM_001181554.1_CBS6413 | cds-NP_012414.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001531.1:172844-173560:- | gene-YJL121C_CENPK1137D | rna-NM_001181554.1_CENPK1137D | cds-NP_012414.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005480.1:182663-183379:- | gene-YJL121C_EthanolRed | rna-NM_001181554.1_EthanolRed | cds-NP_012414.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005544.1:188315-189031:- | gene-YJL121C_FaliES1 | rna-NM_001181554.1_FaliES1 | cds-NP_012414.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000099.1:69487-70203:- | gene-YJL121C_JAY291 | rna-NM_001181554.1_JAY291 | cds-NP_012414.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005416.1:193010-193726:- | gene-YJL121C_MUCL30387 | rna-NM_001181554.1_MUCL30387 | cds-NP_012414.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005448.1:189088-189804:- | gene-YJL121C_MUCL30388 | rna-NM_001181554.1_MUCL30388 | cds-NP_012414.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005288.1:183274-183990:- | gene-YJL121C_MUCL39482 | rna-NM_001181554.1_MUCL39482 | cds-NP_012414.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005432.1:189076-189792:- | gene-YJL121C_MUCL42920 | rna-NM_001181554.1_MUCL42920 | cds-NP_012414.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011819.1:190353-191069:- | gene-YJL121C_NCIM3186 | rna-NM_001181554.1_NCIM3186 | cds-NP_012414.1_NCIM3186 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005272.1:181681-182397:- | gene-YJL121C_NCYC1407 | rna-NM_001181554.1_NCYC1407 | cds-NP_012414.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994149.1:194469-195185:- | gene-YJL121C_PE2H3 | rna-NM_001181554.1_PE2H3 | cds-NP_012414.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999881.1:194113-194829:- | gene-YJL121C_PE2H4 | rna-NM_001181554.1_PE2H4 | cds-NP_012414.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001142.9:190374-191090:- | gene-YJL121C_S288C | rna-NM_001181554.1_S288C | cds-NP_012414.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000085.1:8074-8790:+ | gene-YJL121C_SA1 | rna-NM_001181554.1_SA1 | cds-NP_012414.1_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005496.1:181506-182222:- | gene-YJL121C_ThermosaccDry | rna-NM_001181554.1_ThermosaccDry | cds-NP_012414.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005464.1:188586-189302:- | gene-YJL121C_VR1 | rna-NM_001181554.1_VR1 | cds-NP_012414.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000021.1:168785-169501:- | gene-YJL121C_ZTW1 | rna-NM_001181554.1_ZTW1 | cds-NP_012414.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047496.1:193977-194693:- | gene-YJL121C_Sparadoxus | rna-NM_001181554.1_Sparadoxus | cds-NP_012414.1_Sparadoxus | 93.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |