Gene name: RPD3
Reference locus (S288C): YNL330C
Gene biotype: protein_coding
Description: Histone deacetylase, component of both the Rpd3S and Rpd3L complexes; regulates transcription, silencing, autophagy and other processes by influencing chromatin remodeling; forms at least two different complexes which have distinct functions and members; Rpd3(L) recruitment to the subtelomeric region is regulated by interaction with the arginine methyltransferase, Hmt1p
Top 10 interactors (score): UME1 (0.999); EAF3 (0.999); SDS3 (0.999); SIN3 (0.999); RCO1 (0.999); UME6 (0.999); PHO23 (0.999); HAT2 (0.998); CTI6 (0.998); RXT2 (0.998); SNT1 (0.997); SAP30 (0.997); DEP1 (0.997); SIF2 (0.996); HDA1 (0.996); RXT3 (0.995); HHT2 (0.995); SIR2 (0.995); SET2 (0.992); GCN5 (0.991)
Homologues (species, bitscore): HDAC2 (Homo sapiens, 570.5); Hdac2 (Mus musculus, 570.1); hdac1 (Danio rerio, 570.1); hdac2 (Xenopus tropicalis, 567.4); Rpd3 (Drosophila melanogaster, 558.1); hda-1 (Caenorhabditis elegans, 536.2); HDA6 (Arabidopsis thaliana, 518.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005308.1:11855-13156:- | gene-YNL330C_AKU4011 | rna-NM_001183168.1_AKU4011 | cds-NP_014069.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000211.1:4401-5702:+ | gene-YNL330C_BG1 | rna-NM_001183168.1_BG1 | cds-NP_014069.1_BG1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005516.1:20319-21620:- | gene-YNL330C_Bruggeman | rna-NM_001183168.1_Bruggeman | cds-NP_014069.1_Bruggeman | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005532.1:23397-24698:- | gene-YNL330C_CAT1 | rna-NM_001183168.1_CAT1 | cds-NP_014069.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005372.1:12251-13552:- | gene-YNL330C_CBS1585 | rna-NM_001183168.1_CBS1585 | cds-NP_014069.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005356.1:12622-13923:- | gene-YNL330C_CBS436 | rna-NM_001183168.1_CBS436 | cds-NP_014069.1_CBS436 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005340.1:8907-10208:- | gene-YNL330C_CBS6412 | rna-NM_001183168.1_CBS6412 | cds-NP_014069.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005324.1:8869-10170:- | gene-YNL330C_CBS6413 | rna-NM_001183168.1_CBS6413 | cds-NP_014069.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001535.1:11833-13134:- | gene-YNL330C_CENPK1137D | rna-NM_001183168.1_CENPK1137D | cds-NP_014069.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005484.1:8715-10016:- | gene-YNL330C_EthanolRed | rna-NM_001183168.1_EthanolRed | cds-NP_014069.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005548.1:9614-10915:- | gene-YNL330C_FaliES1 | rna-NM_001183168.1_FaliES1 | cds-NP_014069.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000390.1:44510-45811:+ | gene-YNL330C_JAY291 | rna-NM_001183168.1_JAY291 | cds-NP_014069.1_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005420.1:21077-22378:- | gene-YNL330C_MUCL30387 | rna-NM_001183168.1_MUCL30387 | cds-NP_014069.1_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005452.1:14427-15728:- | gene-YNL330C_MUCL30388 | rna-NM_001183168.1_MUCL30388 | cds-NP_014069.1_MUCL30388 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005292.1:9655-10956:- | gene-YNL330C_MUCL39482 | rna-NM_001183168.1_MUCL39482 | cds-NP_014069.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005436.1:11451-12752:- | gene-YNL330C_MUCL42920 | rna-NM_001183168.1_MUCL42920 | cds-NP_014069.1_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011823.1:17970-19271:- | gene-YNL330C_NCIM3186 | rna-NM_001183168.1_NCIM3186 | cds-NP_014069.1_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005276.1:10989-12290:- | gene-YNL330C_NCYC1407 | rna-NM_001183168.1_NCYC1407 | cds-NP_014069.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994153.1:8287-9588:- | gene-YNL330C_PE2H3 | rna-NM_001183168.1_PE2H3 | cds-NP_014069.1_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999885.1:7675-8976:- | gene-YNL330C_PE2H4 | rna-NM_001183168.1_PE2H4 | cds-NP_014069.1_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001146.8:18001-19302:- | gene-YNL330C_S288C | rna-NM_001183168.1_S288C | cds-NP_014069.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000052.1:78042-79343:+ | gene-YNL330C_SA1 | rna-NM_001183168.1_SA1 | cds-NP_014069.1_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005500.1:10471-11772:- | gene-YNL330C_ThermosaccDry | rna-NM_001183168.1_ThermosaccDry | cds-NP_014069.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005468.1:23113-24414:- | gene-YNL330C_VR1 | rna-NM_001183168.1_VR1 | cds-NP_014069.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000029.1:1681-2982:- | gene-YNL330C_ZTW1 | rna-NM_001183168.1_ZTW1 | cds-NP_014069.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047500.1:19737-21038:- | gene-YNL330C_Sparadoxus | rna-NM_001183168.1_Sparadoxus | cds-NP_014069.1_Sparadoxus | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |