Gene name: RPC53
Reference locus (S288C): YDL150W
Gene biotype: protein_coding
Description: RNA polymerase III subunit C53; Belongs to the eukaryotic RPC4/POLR3D RNA polymerase subunit family
Top 10 interactors (score): RPC25 (0.999); RPC34 (0.999); RPC19 (0.999); RPC11 (0.999); RPO31 (0.999); RPC17 (0.999); RPO26 (0.999); RET1 (0.999); RPB10 (0.999); RPC82 (0.999); RPB5 (0.999); RPC37 (0.999); RPB8 (0.999); RPC31 (0.999); RPC40 (0.999); RPC10 (0.998); BRF1 (0.988); SPT15 (0.982); BDP1 (0.978); TFC4 (0.957)
Homologues (species, bitscore): POLR3D (Homo sapiens, 54.7); Polr3d (Mus musculus, 57.8); zgc:171971 (Danio rerio, 55.5); polr3d (Xenopus tropicalis, 61.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:167761-169029:+ | gene-YDL150W_AKU4011 | rna-NM_001180210.1_AKU4011 | cds-NP_010131.1_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000102.1:380755-382023:- | gene-YDL150W_BG1 | rna-NM_001180210.1_BG1 | cds-NP_010131.1_BG1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:183803-185071:+ | gene-YDL150W_Bruggeman | rna-NM_001180210.1_Bruggeman | cds-NP_010131.1_Bruggeman | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:182122-183390:+ | gene-YDL150W_CAT1 | rna-NM_001180210.1_CAT1 | cds-NP_010131.1_CAT1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:165792-167060:+ | gene-YDL150W_CBS1585 | rna-NM_001180210.1_CBS1585 | cds-NP_010131.1_CBS1585 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:182728-183996:+ | gene-YDL150W_CBS436 | rna-NM_001180210.1_CBS436 | cds-NP_010131.1_CBS436 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:165045-166313:+ | gene-YDL150W_CBS6412 | rna-NM_001180210.1_CBS6412 | cds-NP_010131.1_CBS6412 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:184230-185498:+ | gene-YDL150W_CBS6413 | rna-NM_001180210.1_CBS6413 | cds-NP_010131.1_CBS6413 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:181995-183263:+ | gene-YDL150W_CENPK1137D | rna-NM_001180210.1_CENPK1137D | cds-NP_010131.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:179000-180268:+ | gene-YDL150W_EthanolRed | rna-NM_001180210.1_EthanolRed | cds-NP_010131.1_EthanolRed | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:184532-185800:+ | gene-YDL150W_FaliES1 | rna-NM_001180210.1_FaliES1 | cds-NP_010131.1_FaliES1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000032.1:33754-35022:- | gene-YDL150W_JAY291 | rna-NM_001180210.1_JAY291 | cds-NP_010131.1_JAY291 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:182917-184185:+ | gene-YDL150W_MUCL30387 | rna-NM_001180210.1_MUCL30387 | cds-NP_010131.1_MUCL30387 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:173778-175046:+ | gene-YDL150W_MUCL30388 | rna-NM_001180210.1_MUCL30388 | cds-NP_010131.1_MUCL30388 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:166947-168215:+ | gene-YDL150W_MUCL39482 | rna-NM_001180210.1_MUCL39482 | cds-NP_010131.1_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | MBVV01000307.1:1175-2443:- | gene-YDL150W_MUCL42920 | rna-NM_001180210.1_MUCL42920 | cds-NP_010131.1_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:183266-184534:+ | gene-YDL150W_NCIM3186 | rna-NM_001180210.1_NCIM3186 | cds-NP_010131.1_NCIM3186 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:166883-168151:+ | gene-YDL150W_NCYC1407 | rna-NM_001180210.1_NCYC1407 | cds-NP_010131.1_NCYC1407 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:174116-175384:+ | gene-YDL150W_PE2H3 | rna-NM_001180210.1_PE2H3 | cds-NP_010131.1_PE2H3 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:174120-175388:+ | gene-YDL150W_PE2H4 | rna-NM_001180210.1_PE2H4 | cds-NP_010131.1_PE2H4 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:183343-184611:+ | gene-YDL150W_S288C | rna-NM_001180210.1_S288C | cds-NP_010131.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000043.1:48899-50167:+ | gene-YDL150W_SA1 | rna-NM_001180210.1_SA1 | cds-NP_010131.1_SA1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:184293-185561:+ | gene-YDL150W_ThermosaccDry | rna-NM_001180210.1_ThermosaccDry | cds-NP_010131.1_ThermosaccDry | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:184885-186153:+ | gene-YDL150W_VR1 | rna-NM_001180210.1_VR1 | cds-NP_010131.1_VR1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000006.1:182420-183688:+ | gene-YDL150W_ZTW1 | rna-NM_001180210.1_ZTW1 | cds-NP_010131.1_ZTW1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:184572-185840:+ | gene-YDL150W_Sparadoxus | rna-NM_001180210.1_Sparadoxus | cds-NP_010131.1_Sparadoxus | 89.1 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |